Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   K6T44_RS05770 Genome accession   NZ_CP081937
Coordinates   1229220..1230176 (-) Length   318 a.a.
NCBI ID   WP_004916143.1    Uniprot ID   E4TAL4
Organism   Riemerella anatipestifer strain 20190609E1-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224220..1235176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T44_RS05755 (K6T44_05750) - 1225143..1226207 (-) 1065 WP_004916146.1 formimidoylglutamase -
  K6T44_RS05760 (K6T44_05755) topA 1226219..1228738 (-) 2520 WP_004916145.1 type I DNA topoisomerase -
  K6T44_RS05765 (K6T44_05760) - 1228925..1229179 (-) 255 WP_004916144.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  K6T44_RS05770 (K6T44_05765) pilA 1229220..1230176 (-) 957 WP_004916143.1 signal recognition particle-docking protein FtsY Machinery gene
  K6T44_RS05775 (K6T44_05770) - 1230277..1230426 (-) 150 WP_004916142.1 DUF4295 family protein -
  K6T44_RS05780 (K6T44_05775) rpmG 1230449..1230631 (-) 183 WP_004916141.1 50S ribosomal protein L33 -
  K6T44_RS05785 (K6T44_05780) rpmB 1230642..1230878 (-) 237 WP_004916140.1 50S ribosomal protein L28 -
  K6T44_RS05790 (K6T44_05785) - 1231153..1233201 (-) 2049 WP_004916139.1 S9 family peptidase -
  K6T44_RS05795 (K6T44_05790) - 1233293..1234036 (-) 744 WP_013447024.1 uroporphyrinogen-III synthase -
  K6T44_RS05800 (K6T44_05795) - 1234059..1234703 (-) 645 WP_004916137.1 DUF4271 domain-containing protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34733.97 Da        Isoelectric Point: 6.0732

>NTDB_id=524664 K6T44_RS05770 WP_004916143.1 1229220..1230176(-) (pilA) [Riemerella anatipestifer strain 20190609E1-1]
MSWFKKIFKKEEKETLDRGLEKSSQGFFEKISKAVIGKSKVDDEVLDDLEEVLIASDVGAQTTIKIIERIEDRVARDKYV
GVDELHKLLKEEITALLLENPHADTGNIDEAKKPYVIMVVGVNGVGKTTTIGKLAHQFKTQGKKVVLGAADTFRAAAVDQ
LVIWSERVGVPIVKQNMGSDPASVAFDTVQSAVAQNADVVLIDTAGRLHNKVNLMNELSKIKRVMQKVIPDAPHEVLLVL
DGSTGQNAFEQAKQFTAATEVNALAVTKLDGTAKGGVVIGISDQFQVPVKYIGVGEKMEDLQLFNGTEFVDSLFKKKS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=524664 K6T44_RS05770 WP_004916143.1 1229220..1230176(-) (pilA) [Riemerella anatipestifer strain 20190609E1-1]
ATGAGTTGGTTTAAAAAAATATTCAAAAAAGAAGAGAAGGAAACTTTAGATAGAGGGTTAGAAAAGTCAAGTCAAGGCTT
TTTTGAAAAAATATCCAAAGCAGTCATAGGGAAAAGTAAGGTAGATGATGAAGTTTTAGATGATTTGGAAGAGGTTCTTA
TTGCATCAGATGTAGGGGCTCAGACAACTATCAAGATTATCGAACGAATTGAAGATAGAGTTGCTAGGGATAAGTATGTT
GGTGTAGATGAACTACATAAGCTTCTTAAAGAAGAAATTACAGCATTGCTTTTAGAAAATCCTCATGCTGATACGGGGAA
TATAGATGAGGCTAAAAAACCTTACGTAATAATGGTGGTGGGAGTCAATGGAGTAGGTAAAACAACTACGATAGGTAAAT
TAGCACATCAGTTTAAAACACAGGGTAAAAAAGTGGTGCTAGGAGCAGCAGATACTTTTAGAGCGGCGGCGGTGGACCAG
CTGGTGATATGGAGTGAGCGAGTAGGTGTACCTATTGTAAAGCAAAATATGGGTTCTGACCCTGCTTCTGTTGCCTTTGA
TACAGTGCAATCTGCAGTAGCTCAAAATGCAGATGTAGTACTTATAGATACAGCTGGGAGGCTTCATAATAAAGTAAATC
TAATGAATGAATTGTCTAAGATAAAAAGAGTAATGCAGAAAGTAATTCCTGATGCTCCACATGAGGTTTTATTGGTATTA
GACGGTTCTACAGGGCAAAATGCATTTGAACAAGCTAAGCAATTTACTGCTGCAACAGAAGTTAATGCTCTTGCGGTTAC
AAAATTAGATGGTACAGCAAAAGGAGGTGTGGTTATTGGTATTTCTGATCAATTTCAAGTTCCTGTAAAATATATAGGGG
TAGGAGAGAAGATGGAAGACTTGCAGTTATTTAATGGCACGGAGTTTGTTGACTCTCTCTTCAAGAAAAAGAGTTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(115-314)

SRP54-type protein, helical bundle domain (SRP54_N)

(28-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4TAL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

45.515

94.654

0.431