Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JHX84_RS13310 Genome accession   NZ_CP067043
Coordinates   2577841..2578608 (+) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain 19573-3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2572841..2583608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX84_RS13280 (JHX84_13275) - 2573124..2575256 (+) 2133 WP_003152972.1 HD family phosphohydrolase -
  JHX84_RS13285 (JHX84_13280) ybeY 2575257..2575730 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  JHX84_RS13290 (JHX84_13285) - 2575711..2576085 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  JHX84_RS13295 (JHX84_13290) - 2576209..2576619 (+) 411 WP_003152976.1 cytidine deaminase -
  JHX84_RS13300 (JHX84_13295) era 2576600..2577505 (+) 906 WP_003152978.1 GTPase Era -
  JHX84_RS13305 (JHX84_13300) - 2577661..2577804 (+) 144 WP_007408286.1 YqzL family protein -
  JHX84_RS13310 (JHX84_13305) recO 2577841..2578608 (+) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  JHX84_RS13315 (JHX84_13310) glyQ 2578910..2579797 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  JHX84_RS13320 (JHX84_13315) glyS 2579790..2581829 (+) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  JHX84_RS13325 (JHX84_13320) ccpN 2581930..2582568 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  JHX84_RS13330 (JHX84_13325) - 2582594..2583406 (+) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=524652 JHX84_RS13310 WP_003152982.1 2577841..2578608(+) (recO) [Bacillus velezensis strain 19573-3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=524652 JHX84_RS13310 WP_003152982.1 2577841..2578608(+) (recO) [Bacillus velezensis strain 19573-3]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894