Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BTG_RS28165 Genome accession   NC_018500
Coordinates   5534194..5535933 (+) Length   579 a.a.
NCBI ID   WP_000947770.1    Uniprot ID   A0AAW9J026
Organism   Bacillus thuringiensis HD-771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5529194..5540933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTG_RS28145 (BTG_28505) ispA 5529410..5530300 (+) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -
  BTG_RS28150 (BTG_28510) dxs 5530602..5532494 (+) 1893 WP_000366457.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BTG_RS28155 (BTG_28515) - 5532498..5533337 (+) 840 WP_000111876.1 TlyA family RNA methyltransferase -
  BTG_RS28160 (BTG_28520) argR 5533480..5533929 (+) 450 WP_001032580.1 arginine repressor ArgR -
  BTG_RS28165 (BTG_28525) recN 5534194..5535933 (+) 1740 WP_000947770.1 DNA repair protein RecN Machinery gene
  BTG_RS28170 (BTG_28530) spoIVB 5536052..5537350 (+) 1299 WP_002000940.1 SpoIVB peptidase -
  BTG_RS28175 (BTG_28535) spo0A 5537640..5538434 (+) 795 WP_014894889.1 sporulation transcription factor Spo0A Regulator
  BTG_RS28180 (BTG_28540) - 5538688..5539251 (+) 564 WP_000791083.1 PRK06770 family protein -
  BTG_RS28185 (BTG_28545) - 5539465..5539611 (-) 147 WP_001247671.1 YycC family protein -
  BTG_RS28190 (BTG_28550) - 5539662..5540390 (+) 729 WP_000172594.1 glycerophosphodiester phosphodiesterase -
  BTG_RS28195 (BTG_28555) - 5540440..5540673 (-) 234 WP_001190195.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65821.97 Da        Isoelectric Point: 4.8231

>NTDB_id=52458 BTG_RS28165 WP_000947770.1 5534194..5535933(+) (recN) [Bacillus thuringiensis HD-771]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKSLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENYDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KRAGNAEEPLVEGAPVRLTVDGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=52458 BTG_RS28165 WP_000947770.1 5534194..5535933(+) (recN) [Bacillus thuringiensis HD-771]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGATCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGAAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCGTATTAAAAGAAATTGGGAAATCACTTGTTGATATTCATGGACAGCACG
AAACACAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAATGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCAGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATTATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAGGAAATTTTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAGAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACATCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGCGAATTATG
AAGAGAGCAGGAAATGCAGAAGAACCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGTGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGAGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTAGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment