Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JHZ65_RS04645 Genome accession   NZ_CP067024
Coordinates   991373..992740 (+) Length   455 a.a.
NCBI ID   WP_003381736.1    Uniprot ID   Q0EDX1
Organism   Pseudomonas syringae pv. maculicola strain MAFF 302723     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 986373..997740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHZ65_RS04615 (JHZ65_04620) cydB 986647..987654 (+) 1008 WP_003381747.1 cytochrome d ubiquinol oxidase subunit II -
  JHZ65_RS04620 (JHZ65_04625) - 987676..987843 (+) 168 WP_003381744.1 DUF2474 domain-containing protein -
  JHZ65_RS04625 (JHZ65_04630) - 987931..989055 (-) 1125 WP_005770191.1 methyltransferase -
  JHZ65_RS04630 (JHZ65_04635) - 989185..989418 (-) 234 WP_005770190.1 helix-turn-helix domain-containing protein -
  JHZ65_RS04635 (JHZ65_04640) - 989756..990532 (+) 777 WP_044391904.1 ferredoxin--NADP reductase -
  JHZ65_RS04640 (JHZ65_04645) mscL 990732..991178 (-) 447 WP_007243783.1 large-conductance mechanosensitive channel protein MscL -
  JHZ65_RS04645 (JHZ65_04650) radA 991373..992740 (+) 1368 WP_003381736.1 DNA repair protein RadA Machinery gene
  JHZ65_RS04650 (JHZ65_04655) - 992761..993129 (-) 369 WP_005770186.1 PilZ domain-containing protein -
  JHZ65_RS04655 (JHZ65_04660) - 993415..995490 (+) 2076 WP_005770185.1 carbon starvation CstA family protein -
  JHZ65_RS04660 (JHZ65_04665) - 995518..995715 (+) 198 WP_002555232.1 YbdD/YjiX family protein -
  JHZ65_RS04665 (JHZ65_04670) yjiA 995811..996788 (+) 978 WP_044391906.1 GTPase -
  JHZ65_RS04670 (JHZ65_04675) - 996914..997417 (-) 504 Protein_930 YdcF family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48839.40 Da        Isoelectric Point: 7.1315

>NTDB_id=524525 JHZ65_RS04645 WP_003381736.1 991373..992740(+) (radA) [Pseudomonas syringae pv. maculicola strain MAFF 302723]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGAAAPPSGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=524525 JHZ65_RS04645 WP_003381736.1 991373..992740(+) (radA) [Pseudomonas syringae pv. maculicola strain MAFF 302723]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAATGCGGCGCGACATTTCCCAAGTGGGCGGGCCAGTGTGCTGATTG
CGGCGCCTGGAACACACTGGTCGAAACCATGATCGAAAGCGGTGCCGCCGCGCCTCCCAGCGGGCGCACCGGCTGGACCG
GCTCACAGGCGCAGATCAGAACCCTGGCGGAAGTCAGCGTTGAAGAGATCCCGCGTTTCTCCACCAACTCCGCCGAACTC
GACAGAGTGCTCGGTGGCGGTCTGGTGGATGGTTCTGTGGTGCTGATCGGCGGCGACCCTGGCATCGGCAAGTCGACGAT
TCTGTTGCAAACGCTGTGCAACATCGCCCAGCGCATGCCTGCGCTGTATGTCACCGGTGAGGAATCCCAACAGCAGGTGG
CCATGCGCGCCCGCCGTCTGGGCCTGCCGCAGGACAAACTGCGGGTCATGACCGAAACCTGCATCGAAACCATTATTGCC
ACCGCCAAGGTCGAGAAGCCCAAGGTGATGGTGATTGACTCGATCCAGACGATCTTCACCGAGCAATTGCAGTCCGCACC
GGGTGGCGTGTCGCAAGTGCGCGAAAGCGCCGCCTTGCTGGTGCGCTATGCCAAGCAGAGTGGCACCGCGATTTTTCTGG
TGGGGCATGTCACCAAGGAAGGCGCACTGGCGGGGCCGCGTGTGCTTGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGCGAGTCGGACGGTCGTCTGCGTTTGCTGCGCGCTGTAAAGAACCGTTTCGGCGCGGTAAACGAACTGGGTGTGTTCGG
AATGACCGACAAGGGCCTGAAAGAAGTGTCCAATCCGTCGGCGATTTTTCTGACCCGTGCGCAGGAAGAGGTGCCCGGCA
GCGTGGTCATGGCCACATGGGAAGGCACCCGACCGATGCTGGTCGAAGTTCAGGCGCTGGTGGACGACAGTCACATGTCC
AATCCGCGCCGCGTAACCCTGGGCCTGGATCAGAACCGTCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCAACCCACGACCAGGACGTGTTCCTCAATGTGGTGGGCGGGGTCAAAGTGCTGGAAACCGCGTCAGACCTGGCCTTGA
TGGCCGCTGTCATGTCCAGCCTGCGCAATCGCCCGCTGCCGCATGACTTGCTGGTGTTTGGCGAGGTGGGGCTGTCGGGT
GAGGTCAGGCCGGTGCCCAGCGGGCAGGAGCGCTTGAAAGAGGCTGCCAAGCACGGCTTCAAACGGGCCATCGTGCCGAA
AGGCAATGCGCCGAAAGAAGCGCCTCCCGGTCTGCAGATCATTGCGGTCACGCGTCTGGAACAGGCGCTGGATGCGCTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0EDX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468