Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   JFY49_RS14805 Genome accession   NZ_CP067019
Coordinates   3007821..3008147 (-) Length   108 a.a.
NCBI ID   WP_086196446.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3002821..3013147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS14785 (JFY49_14785) - 3002990..3003673 (-) 684 WP_180174538.1 FHA domain-containing protein -
  JFY49_RS14790 (JFY49_14790) gspD 3003743..3006004 (-) 2262 WP_180174539.1 type II secretion system secretin GspD -
  JFY49_RS14795 (JFY49_14795) - 3006048..3006890 (-) 843 WP_180042016.1 type II secretion system protein N -
  JFY49_RS14800 (JFY49_14800) gspN 3006893..3007636 (-) 744 WP_180042014.1 type II secretion system protein N -
  JFY49_RS14805 (JFY49_14805) hns 3007821..3008147 (-) 327 WP_086196446.1 H-NS family nucleoid-associated regulatory protein Regulator
  JFY49_RS14810 (JFY49_14810) - 3008287..3008721 (-) 435 WP_086196447.1 acyl-CoA thioesterase -
  JFY49_RS14815 (JFY49_14815) - 3008733..3009926 (-) 1194 WP_166170672.1 heme biosynthesis protein HemY -
  JFY49_RS14820 (JFY49_14820) - 3009934..3010776 (-) 843 WP_166170674.1 hypothetical protein -
  JFY49_RS14825 (JFY49_14825) - 3010773..3011552 (-) 780 WP_166170675.1 uroporphyrinogen-III synthase -
  JFY49_RS14830 (JFY49_14830) hemC 3011554..3012471 (-) 918 WP_200223318.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12206.86 Da        Isoelectric Point: 5.2690

>NTDB_id=524489 JFY49_RS14805 WP_086196446.1 3007821..3008147(-) (hns) [Acinetobacter sp. CS-2]
MMPDISNLSVEELKRLQVEAEALIASKNDQAVEDAYQQILDIADNVGLSIEQILEFGATKRKKSTRKSVEPRYRSKKNSA
DTWTGRGKQPRWLVAELESGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=524489 JFY49_RS14805 WP_086196446.1 3007821..3008147(-) (hns) [Acinetobacter sp. CS-2]
ATGATGCCTGACATTAGTAATTTATCTGTTGAAGAGTTAAAGCGTTTACAAGTTGAAGCTGAAGCATTAATTGCTTCTAA
AAATGATCAGGCAGTTGAAGATGCCTATCAGCAAATTTTGGACATTGCTGATAACGTTGGTTTAAGCATTGAACAAATTT
TAGAGTTTGGTGCCACCAAACGTAAGAAAAGTACACGCAAATCTGTAGAACCACGTTATCGCAGCAAAAAGAATTCAGCA
GATACTTGGACTGGTCGTGGTAAACAACCGCGCTGGTTGGTTGCAGAACTTGAAAGTGGTGCAAAATTAGAAGATTTTCT
CATTTGA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

80.556

100

0.806