Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   JFY49_RS13615 Genome accession   NZ_CP067019
Coordinates   2777203..2778081 (-) Length   292 a.a.
NCBI ID   WP_200223213.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2772203..2783081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS13595 (JFY49_13595) miaB 2773558..2775012 (+) 1455 WP_166168761.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  JFY49_RS13600 (JFY49_13600) - 2775052..2776128 (+) 1077 WP_200223209.1 PhoH family protein -
  JFY49_RS13605 (JFY49_13605) ybeY 2776148..2776630 (+) 483 WP_200223210.1 rRNA maturation RNase YbeY -
  JFY49_RS13610 (JFY49_13610) - 2776747..2777145 (+) 399 WP_200223211.1 hypothetical protein -
  JFY49_RS13615 (JFY49_13615) tonB2 2777203..2778081 (-) 879 WP_200223213.1 energy transducer TonB Machinery gene
  JFY49_RS13620 (JFY49_13620) - 2778321..2779001 (+) 681 WP_166168753.1 hypothetical protein -
  JFY49_RS13625 (JFY49_13625) - 2779166..2779879 (+) 714 WP_200223214.1 DUF3108 domain-containing protein -
  JFY49_RS13630 (JFY49_13630) - 2779971..2780546 (+) 576 WP_086195739.1 xanthine phosphoribosyltransferase -
  JFY49_RS13635 (JFY49_13635) - 2780944..2781555 (-) 612 WP_200223215.1 hypothetical protein -
  JFY49_RS13640 (JFY49_13640) - 2781672..2782817 (-) 1146 WP_200223216.1 CsgG/HfaB family protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33164.96 Da        Isoelectric Point: 9.1584

>NTDB_id=524479 JFY49_RS13615 WP_200223213.1 2777203..2778081(-) (tonB2) [Acinetobacter sp. CS-2]
MLKKISFAPLMHAWWKDPIFTSAVIVAVALHLIILTLQFAMPQESDAAVKEIAVTLRPSDDKVEHADFLAQADQQGSGTF
REAHRMSSDMPAAMTEQTTGEQQQETLERLQQKRELSFEEKVLMTTLSWKKEAEQNQRKKAMQELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDISAAYLEKFREKVEFYGNRYYPDAAKVQRLAGEVRLMVILNKSGGIRAIRLIE
SSGHGLLDEAAKTSVRKAAPFGGFDKGMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 879 bp        

>NTDB_id=524479 JFY49_RS13615 WP_200223213.1 2777203..2778081(-) (tonB2) [Acinetobacter sp. CS-2]
ATGCTTAAGAAAATCAGTTTCGCACCTTTAATGCATGCATGGTGGAAAGATCCAATTTTCACAAGCGCAGTGATTGTAGC
TGTTGCTTTGCATTTGATTATTTTGACTTTGCAGTTTGCCATGCCGCAAGAAAGTGATGCCGCAGTCAAAGAGATCGCCG
TTACATTACGTCCGAGTGATGACAAGGTGGAACATGCGGATTTTTTGGCACAGGCAGATCAACAAGGTTCTGGAACTTTT
CGTGAAGCACACCGTATGTCGAGCGATATGCCGGCAGCGATGACTGAGCAAACGACCGGTGAGCAGCAACAGGAAACTCT
GGAGCGTTTACAACAGAAACGCGAACTCAGCTTTGAAGAAAAAGTGCTGATGACCACCTTAAGCTGGAAGAAAGAAGCAG
AACAGAACCAGCGCAAAAAAGCCATGCAGGAGCTGAATAGCCAGTTTCAGGCCAAGGCCGCGATGGTGGCAAGTCTGGAA
GCACAATATTTGCAACGTCAGCAAAACTTTAGCCGTCAGCAAAAAATTAAAACCGTAGATGGTATACAGGCCAAGCAGGA
TATTTCAGCCGCCTATTTGGAAAAATTCCGTGAAAAAGTTGAATTTTACGGTAACCGCTATTATCCCGATGCAGCCAAAG
TGCAACGCCTCGCAGGAGAGGTTCGTTTAATGGTCATCTTAAATAAAAGTGGCGGAATTCGTGCCATTCGCCTGATTGAA
AGTTCAGGTCATGGTTTACTGGATGAAGCGGCCAAAACTTCAGTACGTAAAGCTGCTCCATTCGGTGGTTTTGATAAAGG
GATGAAAGATATTTCAGAACTTCGCATTGTGCGTACCTGGCGGTTTGACCCGGCTGAAGCTGAATTTGAGGTGCATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.525

100

0.723