Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   JFY49_RS09240 Genome accession   NZ_CP067019
Coordinates   1863077..1863421 (-) Length   114 a.a.
NCBI ID   WP_265092682.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1858077..1868421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS09210 (JFY49_09210) tadA 1858255..1858776 (-) 522 WP_180080322.1 tRNA adenosine(34) deaminase TadA -
  JFY49_RS09215 (JFY49_09215) - 1858781..1859905 (-) 1125 WP_086195472.1 enoyl-CoA hydratase/isomerase family protein -
  JFY49_RS09220 (JFY49_09220) ung 1859902..1860615 (-) 714 WP_086195473.1 uracil-DNA glycosylase -
  JFY49_RS09225 (JFY49_09225) - 1860662..1861258 (-) 597 WP_180041646.1 6-pyruvoyl trahydropterin synthase family protein -
  JFY49_RS09230 (JFY49_09230) gspK 1861431..1862336 (-) 906 WP_218944695.1 type II secretion system minor pseudopilin GspK -
  JFY49_RS09235 (JFY49_09235) xcpW 1862397..1863080 (-) 684 WP_200222655.1 type II secretion system minor pseudopilin GspJ Machinery gene
  JFY49_RS09240 (JFY49_09240) xcpV 1863077..1863421 (-) 345 WP_265092682.1 type II secretion system protein GspI Machinery gene
  JFY49_RS09245 (JFY49_09245) - 1863507..1864067 (-) 561 WP_200222657.1 type II secretion system protein -
  JFY49_RS09250 (JFY49_09250) - 1864077..1864691 (-) 615 WP_200222658.1 TetR/AcrR family transcriptional regulator -
  JFY49_RS09255 (JFY49_09255) - 1864737..1865510 (-) 774 WP_200222659.1 TatD family hydrolase -
  JFY49_RS09260 (JFY49_09260) - 1865537..1865878 (-) 342 WP_092818360.1 PilZ domain-containing protein -
  JFY49_RS09265 (JFY49_09265) - 1865900..1866883 (-) 984 WP_180041668.1 DNA polymerase III subunit delta' -
  JFY49_RS09270 (JFY49_09270) kdsB 1866897..1867658 (-) 762 WP_180041670.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12527.44 Da        Isoelectric Point: 10.1503

>NTDB_id=524473 JFY49_RS09240 WP_265092682.1 1863077..1863421(-) (xcpV) [Acinetobacter sp. CS-2]
MVALAIFATAAIAFTKVAMQYTQATSNAILRTKAQFVALNEVAVMEINQEWLQGTQSKQVTQQGETWQIDKSAQLTISPN
VQRIEVQVSLFNVKSGKVESGVTHLVFFNPKAKA

Nucleotide


Download         Length: 345 bp        

>NTDB_id=524473 JFY49_RS09240 WP_265092682.1 1863077..1863421(-) (xcpV) [Acinetobacter sp. CS-2]
ATGGTTGCTTTGGCGATTTTTGCCACTGCTGCAATTGCTTTTACCAAAGTGGCAATGCAATACACCCAGGCAACATCCAA
TGCCATTTTAAGAACCAAGGCGCAATTCGTAGCCTTGAATGAAGTCGCCGTGATGGAAATCAATCAGGAATGGTTGCAGG
GAACCCAATCCAAACAGGTCACCCAGCAAGGTGAAACCTGGCAAATTGACAAATCTGCGCAATTGACCATTAGTCCAAAT
GTACAACGCATAGAAGTACAGGTCAGTTTGTTTAATGTGAAAAGTGGCAAGGTTGAATCGGGAGTGACGCATTTGGTTTT
CTTCAACCCGAAGGCCAAAGCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.825

100

0.798