Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BTG_RS22105 Genome accession   NC_018500
Coordinates   4452013..4453362 (+) Length   449 a.a.
NCBI ID   WP_014894862.1    Uniprot ID   A0A9W3NZA5
Organism   Bacillus thuringiensis HD-771     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4447013..4458362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTG_RS22085 (BTG_22410) - 4448108..4448743 (-) 636 WP_000926669.1 YigZ family protein -
  BTG_RS22090 (BTG_22415) - 4448980..4449822 (+) 843 WP_000684725.1 DegV family protein -
  BTG_RS22095 (BTG_22420) - 4449995..4450309 (+) 315 WP_000400857.1 winged helix-turn-helix transcriptional regulator -
  BTG_RS22100 (BTG_22425) - 4450458..4451885 (+) 1428 WP_000499487.1 NlpC/P60 family protein -
  BTG_RS22105 (BTG_22430) comFA 4452013..4453362 (+) 1350 WP_014894862.1 ATP-dependent helicase ComFA Machinery gene
  BTG_RS22110 (BTG_22435) - 4453362..4454066 (+) 705 WP_003255239.1 ComF family protein -
  BTG_RS22115 (BTG_22440) cspC 4454193..4454390 (+) 198 WP_001990088.1 cold shock protein CspC -
  BTG_RS22120 (BTG_22445) hpf 4454712..4455254 (+) 543 WP_000671187.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BTG_RS22125 (BTG_22450) - 4455527..4456000 (+) 474 WP_000023375.1 hypothetical protein -
  BTG_RS22130 (BTG_22455) - 4456118..4456687 (+) 570 WP_000767072.1 hypothetical protein -
  BTG_RS22135 (BTG_22460) - 4456719..4457507 (+) 789 WP_000120041.1 hypothetical protein -
  BTG_RS22140 (BTG_22465) - 4457494..4458189 (+) 696 WP_000466501.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51124.01 Da        Isoelectric Point: 10.0167

>NTDB_id=52446 BTG_RS22105 WP_014894862.1 4452013..4453362(+) (comFA) [Bacillus thuringiensis HD-771]
MLAGKQLLLDELSSDLQRELNDLKKKGEVVCVQGVKKKNSKYMCQRCGNVDQRLFASFLCRRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKKLNLLQWNGKLSTGQNLAAQGVVEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KERAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIHKRIPRVLLQWLQTYLNKKHPIFL
FVPHVRYIEEISLLLKSLNKRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=52446 BTG_RS22105 WP_014894862.1 4452013..4453362(+) (comFA) [Bacillus thuringiensis HD-771]
ATGCTGGCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAAGAAGGG
AGAGGTCGTGTGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCAGCGGC
TATTTGCGTCGTTTTTATGTAGAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAAATTAAACTTGTTACAGTGGAACGGGAAGTT
GTCTACTGGTCAGAATTTGGCGGCACAAGGTGTTGTAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTGCGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAGGGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAACATCCTATTTTTTTA
TTTGTCCCCCATGTGCGATATATAGAAGAGATAAGCCTGTTGTTAAAATCATTAAACAAGCGAATTGAAGGTGTACATGC
AGAAGATCCGGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAAGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTAGCGGTTTTAGGGGCTGAAGAAGAAATATTCTCAGAAAGTGCACTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCCAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(311-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.357

98.441

0.506
  comFA Latilactobacillus sakei subsp. sakei 23K

41.709

88.641

0.37

Multiple sequence alignment