Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6H88_RS06385 Genome accession   NZ_CP067018
Coordinates   1340159..1341505 (-) Length   448 a.a.
NCBI ID   WP_034866427.1    Uniprot ID   A0A7T7V1L9
Organism   Elizabethkingia bruuniana strain FDAARGOS_1031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1335159..1346505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H88_RS06360 (I6H88_06360) - 1335448..1336434 (-) 987 WP_034866418.1 NAD-dependent epimerase/dehydratase family protein -
  I6H88_RS06365 (I6H88_06365) - 1336431..1337264 (-) 834 WP_034866420.1 SDR family oxidoreductase -
  I6H88_RS06370 (I6H88_06370) - 1337590..1338294 (-) 705 WP_034866421.1 VanW family protein -
  I6H88_RS06375 (I6H88_06375) - 1338301..1338981 (-) 681 WP_034866423.1 class I SAM-dependent methyltransferase -
  I6H88_RS06380 (I6H88_06380) - 1338984..1340138 (-) 1155 WP_034866425.1 AraC family transcriptional regulator -
  I6H88_RS06385 (I6H88_06385) radA 1340159..1341505 (-) 1347 WP_034866427.1 DNA repair protein RadA Machinery gene
  I6H88_RS06390 (I6H88_06390) - 1341722..1343341 (+) 1620 WP_034866429.1 CTP synthase -
  I6H88_RS06395 (I6H88_06395) yidC 1343350..1345131 (+) 1782 WP_034866431.1 membrane protein insertase YidC -
  I6H88_RS06400 (I6H88_06400) - 1345185..1345322 (-) 138 WP_059333890.1 hypothetical protein -
  I6H88_RS06405 (I6H88_06405) - 1345393..1345962 (-) 570 WP_034870944.1 ribonuclease HII -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49785.28 Da        Isoelectric Point: 6.7597

>NTDB_id=524445 I6H88_RS06385 WP_034866427.1 1340159..1341505(-) (radA) [Elizabethkingia bruuniana strain FDAARGOS_1031]
MAKVKTAYYCQNCGTQYPQWHGQCKNCGEWNTLVEEVIEKSASKNYSGEKKQHIINIIEVNAQEEPRIATPSDELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMRKRVLYVSGEESASQIKMRADRLTDLQNPECFLFTETSVDKILHEAKKLQ
PQFMILDSIQTLHSSLIESSPGTVSQIRECSSEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSC
TGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEKYCFAGEIGLSGEIRPVP
QIEHRITEAEKLGYDKIYVSNLNKIPKRKFAIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=524445 I6H88_RS06385 WP_034866427.1 1340159..1341505(-) (radA) [Elizabethkingia bruuniana strain FDAARGOS_1031]
GTGGCAAAGGTCAAAACGGCATATTACTGTCAAAATTGCGGAACTCAGTATCCGCAGTGGCACGGACAGTGCAAAAATTG
TGGAGAATGGAATACTTTGGTTGAAGAAGTTATAGAAAAATCGGCTTCAAAAAATTATTCCGGAGAAAAGAAACAGCATA
TCATTAACATTATTGAGGTCAACGCTCAGGAAGAACCAAGAATTGCAACTCCGAGCGATGAACTGAATCGTGTATTGGGA
GGTGGGATTGTACTGGGTTCTGTTACCTTAATTGGTGGTGAACCGGGCATCGGAAAATCCACCCTTTTGCTTCAGCTGGC
ACTAAAAATGCGCAAGCGTGTTTTGTATGTCTCCGGAGAAGAAAGCGCTTCACAAATTAAAATGCGTGCAGACCGTCTTA
CCGACCTCCAAAATCCGGAGTGCTTCCTTTTTACAGAAACTTCTGTGGATAAAATTCTGCATGAAGCGAAAAAGTTACAG
CCTCAGTTTATGATTCTGGACTCTATACAGACATTACATTCCAGCCTTATAGAAAGCTCTCCGGGAACAGTTTCTCAGAT
CCGGGAATGTTCCTCAGAAATTATAAAGTTTGCCAAAGAAACCAATACTCCGGTATTTCTGGTGGGTCATATCACCAAAG
ACGGACAGATTGCCGGTCCGAAAGTACTGGAACATATGGTAGATGTGGTTCTAAATTTCGATGGCGACAGAAATCACCTT
TTCAGGTTACTAAGAGCTAATAAAAACCGTTTTGGCTCCACTTCAGAAATTGGTATTTATGAAATGATATCTCAGGGTCT
GAAAGAAATTAAGAATCCTTCTGAAATTCTGATTACCAAAAAATTTGAAGAGCTATCCGGTAACTCGGTAGCCGTAACCC
TGGAAGGAAACCGTCCAATGCTACTGGAAATTCAGGCTTTAGTAAGTACCGCAGTATATGGTACTCCACAGAGAAGCTGC
ACTGGTTTCGATGCAAAAAGGTTGAATATGCTTCTGGCGGTTCTGGAAAAACGCGCAGGCTTCCAGCTTGGATCAAAAGA
TGTCTTCCTGAATATAACTGGCGGTATCAAAACAGATGACCCGGCACTGGATCTAGCAGTTGTAGCCTCTATTCTGTCTT
CCAATGAAGATATTGCTATTTCCGAGAAGTATTGCTTTGCAGGAGAAATAGGTCTTAGTGGAGAAATACGCCCTGTTCCC
CAGATTGAACACCGGATCACAGAAGCCGAAAAGCTGGGATATGATAAAATCTACGTTTCCAATCTGAATAAAATACCTAA
ACGGAAATTTGCGATAAAGATTGAAGAAGTCAGCAAAATTGAAGATTTTCACGAAAGACTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7V1L9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.796

100

0.498
  radA Streptococcus pneumoniae Rx1

48.796

100

0.498
  radA Streptococcus pneumoniae D39

48.796

100

0.498
  radA Streptococcus pneumoniae TIGR4

48.796

100

0.498
  radA Streptococcus mitis NCTC 12261

48.791

100

0.496
  radA Streptococcus mitis SK321

48.571

100

0.493
  radA Bacillus subtilis subsp. subtilis str. 168

49.42

96.205

0.475