Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6I26_RS11110 Genome accession   NZ_CP067014
Coordinates   2264452..2265816 (-) Length   454 a.a.
NCBI ID   WP_126567373.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2259452..2270816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I26_RS11095 (I6I26_11095) cysE 2260621..2261250 (-) 630 WP_176745279.1 serine O-acetyltransferase -
  I6I26_RS11100 (I6I26_11100) gltX 2261616..2263067 (-) 1452 WP_126567372.1 glutamate--tRNA ligase -
  I6I26_RS11105 (I6I26_11105) - 2263352..2264425 (-) 1074 WP_108000043.1 PIN/TRAM domain-containing protein -
  I6I26_RS11110 (I6I26_11110) radA 2264452..2265816 (-) 1365 WP_126567373.1 DNA repair protein RadA Machinery gene
  I6I26_RS11115 (I6I26_11115) - 2266168..2268621 (-) 2454 WP_029056342.1 ATP-dependent Clp protease ATP-binding subunit -
  I6I26_RS11120 (I6I26_11120) - 2268637..2269641 (-) 1005 WP_037555779.1 protein arginine kinase -
  I6I26_RS11125 (I6I26_11125) - 2269634..2270188 (-) 555 WP_017638465.1 UvrB/UvrC motif-containing protein -
  I6I26_RS11130 (I6I26_11130) - 2270209..2270670 (-) 462 WP_002451197.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49865.35 Da        Isoelectric Point: 6.7648

>NTDB_id=524428 I6I26_RS11110 WP_126567373.1 2264452..2265816(-) (radA) [Staphylococcus pasteuri strain FDAARGOS_1069]
MAKKKIIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKETAGKVQTLDSIKHESTPRVLTESKEFDRV
LGGGIVNGSLVLIGGDPGIGKSTLLLQICASLSQSKNVLYITGEESINQTKLRADRLEEDSSKLQVLAETDLEVIYQTVK
DINPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVMNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFIGEVGLTGEVR
RVARIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEDIKVVGVSSVHDALKYAFNS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=524428 I6I26_RS11110 WP_126567373.1 2264452..2265816(-) (radA) [Staphylococcus pasteuri strain FDAARGOS_1069]
TTGGCCAAGAAAAAAATAATATTTGAATGTATGGCATGTGGCTATCAATCTCCAAAATGGATGGGGAAATGCCCTAACTG
TGGTGCATGGAACCAAATGGAAGAAATAGTTGAAAAAGCCGCCAATCCAAAACATGGTGTTAAATCCAAAGAAACTGCAG
GAAAAGTACAAACACTAGACAGTATTAAACATGAATCTACACCACGAGTGCTCACAGAATCAAAAGAGTTTGACCGTGTA
CTTGGTGGAGGCATTGTAAATGGATCTCTTGTCTTAATAGGCGGTGACCCAGGTATTGGGAAGTCAACATTACTTTTACA
AATTTGTGCTTCTCTCTCTCAATCTAAAAATGTTTTATACATTACAGGTGAGGAATCAATTAATCAAACAAAACTTCGTG
CAGATCGCTTAGAAGAAGACTCAAGCAAGTTACAAGTGTTGGCTGAAACAGATCTAGAAGTAATCTATCAGACAGTTAAA
GATATTAATCCAGATTTATTAGTCGTTGACTCAATACAAACAATTTATCACCCAGAAATTAGTTCCGCACCTGGTTCTGT
CTCTCAAGTAAGAGAGAGTACACAAAGCTTAATGAATATCGCTAAACAAATGAATATCGCGACATTTATTGTTGGTCATG
TTACTAAAGAGGGGCAAATAGCTGGACCTAGATTACTCGAACACATGGTTGATACAGTGCTTTATTTCGAAGGTGATGAA
CACCATGCCTATAGAATATTAAGAGCCGTTAAAAACCGTTTTGGTTCAACGAATGAGATGGGTATTTTTGAAATGAAACA
AAGCGGGTTAAAAGGAGTTATGAATCCTTCCGAAATGTTTTTAGAAGAACGTTCTACTAATGTTCCAGGGTCAACAATAG
TATCGACTATGGAAGGAACAAGACCTTTACTTATTGAAGTTCAGGCTTTAGTAACACCTACAACATTCAACAACCCACGT
CGAATGGCTACAGGCATTGACCACAATCGCTTGAGCTTATTAATGGCAGTGTTAGAGAAAAAAGAAAATTATCTACTACA
GCAACAAGATGCATATATTAAAGTAGCTGGAGGAGTGAAATTAACTGAACCAGCAGTTGATCTTAGTATTATAGTTGCTA
CTGCATCTAGTTTTAAAGATAAAGCAGTAGACGGCTTAGATTGTTTTATTGGCGAAGTTGGTTTGACTGGTGAAGTAAGA
CGAGTAGCAAGAATTGAACAGCGTGTTCAAGAAGCTGCAAAATTAGGATTTAAAAGGGTGATTATTCCACAAACTAATAT
TGGTGGTTGGACATTCCCTGAGGATATAAAAGTTGTCGGTGTATCATCAGTTCATGACGCATTAAAGTATGCATTTAATT
CATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.447

100

0.667
  radA Streptococcus pneumoniae Rx1

59.735

99.559

0.595
  radA Streptococcus pneumoniae D39

59.735

99.559

0.595
  radA Streptococcus pneumoniae R6

59.735

99.559

0.595
  radA Streptococcus pneumoniae TIGR4

59.735

99.559

0.595
  radA Streptococcus mitis NCTC 12261

59.735

99.559

0.595
  radA Streptococcus mitis SK321

59.735

99.559

0.595