Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   I6I26_RS04145 Genome accession   NZ_CP067014
Coordinates   862091..862807 (-) Length   238 a.a.
NCBI ID   WP_017638099.1    Uniprot ID   A0A654BEB4
Organism   Staphylococcus pasteuri strain FDAARGOS_1069     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 857091..867807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I26_RS04130 (I6I26_04130) - 858509..859459 (+) 951 WP_046467596.1 LacI family DNA-binding transcriptional regulator -
  I6I26_RS04135 (I6I26_04135) - 859579..861063 (+) 1485 WP_126568134.1 sucrose-6-phosphate hydrolase -
  I6I26_RS04140 (I6I26_04140) - 861060..862019 (+) 960 WP_126568137.1 carbohydrate kinase -
  I6I26_RS04145 (I6I26_04145) agrA 862091..862807 (-) 717 WP_017638099.1 LytTR family DNA-binding domain-containing protein Regulator
  I6I26_RS04150 (I6I26_04150) - 862820..864108 (-) 1289 Protein_816 GHKL domain-containing protein -
  I6I26_RS04155 (I6I26_04155) - 864133..864273 (-) 141 WP_126568052.1 cyclic lactone autoinducer peptide -
  I6I26_RS04160 (I6I26_04160) - 864278..864841 (-) 564 WP_119623148.1 accessory gene regulator AgrB -
  I6I26_RS04165 (I6I26_04165) - 865159..865236 (+) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  I6I26_RS04170 (I6I26_04170) - 865301..865378 (+) 78 WP_072291871.1 delta-lysin family phenol-soluble modulin -
  I6I26_RS04175 (I6I26_04175) - 865775..866560 (-) 786 WP_126568055.1 carbon-nitrogen family hydrolase -
  I6I26_RS04180 (I6I26_04180) - 866675..867301 (-) 627 WP_126568058.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27928.93 Da        Isoelectric Point: 5.6599

>NTDB_id=524408 I6I26_RS04145 WP_017638099.1 862091..862807(-) (agrA) [Staphylococcus pasteuri strain FDAARGOS_1069]
MKIFICEDDPKQRENMTSIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=524408 I6I26_RS04145 WP_017638099.1 862091..862807(-) (agrA) [Staphylococcus pasteuri strain FDAARGOS_1069]
ATGAAAATTTTCATTTGCGAAGATGATCCAAAACAAAGAGAGAATATGACTTCAATTATTAAAAATTATATCATGATTGA
GGAAAAACCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCAAAAGAAATGAATGATATCG
GTTGTTATTTCTTAGATATCCAACTCGAAGCAGATATTAATGGTATTAAATTAGGTAGTGAAATTCGCAAACATGATCCT
GTCGGCAATATTATCTTTGTTACAAGTCATAGCGAACTAACATACCTCACCTTTGTATATAAAGTGGCAGCGATGGATTT
CATATTTAAAGATGACCCAGCAGAACTGAAAACACGAATTATTGATTGTTTAGAAACCGCTCACACAAGACTTAAGTTAT
TATCAAAAGAAAGTAATGTTGAAACAATCGAATTAAAACGTGGAAGTAATTCAGTGTATGTACAATATGACGATATTATG
TTTTTCGAATCATCTAGCAAATCACATCGTTTAATCGCCCATTTAGATAATAGACAAATCGAATTTTATGGTAATCTTAA
AGAATTAAGTCAATTAGATGACCGCTTCTTTAGGTGCCACAATAGTTTTGTAGTTAATCGAAGAAACATAGAATCAATTG
ATTCAAAAGAACGTATTGTCTATTTCAAAAACAAAGAACATTGTTATGCATCTGTTCGAAATGTTAAAAAAATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A654BEB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.697

100

0.937