Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   N149_RS01525 Genome accession   NC_022660
Coordinates   308279..308875 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli 15-537360     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303279..313875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N149_RS01510 (N149_1423) ctsR 305986..306297 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  N149_RS01515 (N149_1422) ctsD 306275..307693 (+) 1419 WP_002833219.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N149_RS01520 (N149_1421) ctsP 307686..308282 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  N149_RS01525 (N149_1420) ctsX 308279..308875 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  N149_RS01530 (N149_1419) ctsE 308868..310430 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  N149_RS01535 (N149_1418) ctsF 310417..311592 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  N149_RS01540 (N149_1417) - 311589..312353 (-) 765 WP_002781157.1 TSUP family transporter -
  N149_RS01545 (N149_1416) - 312356..313121 (-) 766 Protein_296 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=52437 N149_RS01525 WP_002779313.1 308279..308875(+) (ctsX) [Campylobacter coli 15-537360]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=52437 N149_RS01525 WP_002779313.1 308279..308875(+) (ctsX) [Campylobacter coli 15-537360]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434

Multiple sequence alignment