Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BTG_RS13865 Genome accession   NC_018500
Coordinates   2794468..2794791 (+) Length   107 a.a.
NCBI ID   WP_000578875.1    Uniprot ID   -
Organism   Bacillus thuringiensis HD-771     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2789468..2799791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTG_RS13850 (BTG_14315) - 2789985..2791352 (-) 1368 WP_000028386.1 aldehyde dehydrogenase -
  BTG_RS13855 inhA1 2791524..2793911 (-) 2388 Protein_2811 M6 family metalloprotease immune inhibitor InhA1 -
  BTG_RS13860 (BTG_14330) - 2794254..2794388 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  BTG_RS13865 (BTG_14335) sinR 2794468..2794791 (+) 324 WP_000578875.1 helix-turn-helix domain-containing protein Regulator
  BTG_RS13870 (BTG_14340) calY 2794864..2795457 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  BTG_RS13875 (BTG_14345) - 2795846..2796670 (-) 825 WP_014894816.1 DUF4047 domain-containing protein -
  BTG_RS13880 (BTG_14350) - 2796805..2797392 (-) 588 WP_000172852.1 CalY family protein -
  BTG_RS13885 (BTG_14355) sipW 2797453..2798022 (-) 570 WP_000767801.1 signal peptidase I SipW -
  BTG_RS13890 (BTG_14360) - 2798218..2799504 (-) 1287 WP_000247022.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12291.16 Da        Isoelectric Point: 9.9745

>NTDB_id=52425 BTG_RS13865 WP_000578875.1 2794468..2794791(+) (sinR) [Bacillus thuringiensis HD-771]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=52425 BTG_RS13865 WP_000578875.1 2794468..2794791(+) (sinR) [Bacillus thuringiensis HD-771]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment