Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   U471_RS18270 Genome accession   NC_022653
Coordinates   3767133..3767822 (-) Length   229 a.a.
NCBI ID   WP_012118834.1    Uniprot ID   A7ZAG6
Organism   Bacillus amyloliquefaciens CC178     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3762133..3772822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS18250 (U471_38180) - 3763038..3763385 (-) 348 WP_012118831.1 YxeA family protein -
  U471_RS18255 (U471_38190) yxdM 3763399..3765267 (-) 1869 WP_012118832.1 ABC transporter permease YxdM -
  U471_RS18260 (U471_38200) yxdL 3765242..3766015 (-) 774 WP_007614823.1 ABC transporter ATP-binding protein YxdL -
  U471_RS18265 (U471_38210) yxdK 3766159..3767136 (-) 978 WP_023357208.1 two-component system sensor histidine kinase YxdK -
  U471_RS18270 (U471_38220) braR 3767133..3767822 (-) 690 WP_012118834.1 two-component system response regulator YxdJ Regulator
  U471_RS18275 (U471_38230) - 3767972..3769411 (-) 1440 WP_012118835.1 sensor histidine kinase -
  U471_RS18280 (U471_38240) - 3769408..3770130 (-) 723 WP_012118836.1 response regulator transcription factor -
  U471_RS18285 (U471_38250) - 3770373..3771284 (+) 912 WP_012118837.1 ABC transporter ATP-binding protein -
  U471_RS18290 (U471_38260) - 3771281..3772039 (+) 759 WP_012118838.1 ABC transporter permease -
  U471_RS18295 (U471_38270) - 3772056..3772790 (+) 735 WP_012118839.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26575.24 Da        Isoelectric Point: 4.7748

>NTDB_id=52424 U471_RS18270 WP_012118834.1 3767133..3767822(-) (braR) [Bacillus amyloliquefaciens CC178]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAADDFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRGLS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=52424 U471_RS18270 WP_012118834.1 3767133..3767822(-) (braR) [Bacillus amyloliquefaciens CC178]
ATGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGATGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAAGTAATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
TATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGGGCTGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZAG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393

Multiple sequence alignment