Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BTG_RS07040 Genome accession   NC_018500
Coordinates   1406143..1406421 (-) Length   92 a.a.
NCBI ID   WP_000799040.1    Uniprot ID   -
Organism   Bacillus thuringiensis HD-771     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401143..1411421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTG_RS06985 (BTG_07215) - 1401147..1401455 (-) 309 WP_000367355.1 hypothetical protein -
  BTG_RS06990 (BTG_07220) - 1401481..1402221 (-) 741 WP_000783006.1 DNA cytosine methyltransferase -
  BTG_RS36690 - 1402276..1402407 (-) 132 WP_258035171.1 hypothetical protein -
  BTG_RS06995 (BTG_07225) - 1402444..1402866 (-) 423 WP_000805075.1 hypothetical protein -
  BTG_RS07000 (BTG_07230) - 1402869..1403111 (-) 243 WP_000137372.1 hypothetical protein -
  BTG_RS07005 (BTG_07235) - 1403138..1403653 (-) 516 WP_001029775.1 hypothetical protein -
  BTG_RS07010 (BTG_07240) - 1403698..1403898 (-) 201 WP_000133156.1 hypothetical protein -
  BTG_RS07015 (BTG_07245) - 1404092..1404568 (-) 477 WP_000679228.1 hypothetical protein -
  BTG_RS07020 (BTG_07250) - 1404572..1405087 (-) 516 WP_000425726.1 dUTP diphosphatase -
  BTG_RS07025 (BTG_07255) - 1405108..1405581 (-) 474 WP_001272176.1 hypothetical protein -
  BTG_RS33540 (BTG_07260) - 1405607..1405771 (-) 165 WP_000711473.1 DUF3954 domain-containing protein -
  BTG_RS07035 (BTG_07265) - 1405791..1406150 (-) 360 WP_000917701.1 hypothetical protein -
  BTG_RS07040 (BTG_07270) abrB 1406143..1406421 (-) 279 WP_000799040.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BTG_RS07045 (BTG_07275) - 1406436..1406921 (-) 486 WP_000757688.1 YpiB family protein -
  BTG_RS07050 (BTG_07280) - 1406925..1407992 (-) 1068 WP_001060922.1 DnaD domain-containing protein -
  BTG_RS35765 (BTG_07285) - 1408050..1408214 (-) 165 WP_000390306.1 hypothetical protein -
  BTG_RS07060 (BTG_07290) - 1408271..1408546 (-) 276 WP_041487944.1 helix-turn-helix domain-containing protein -
  BTG_RS07065 (BTG_07295) - 1408704..1408889 (-) 186 WP_000854264.1 helix-turn-helix domain-containing protein -
  BTG_RS07070 (BTG_07300) - 1409090..1409443 (+) 354 WP_000481768.1 helix-turn-helix domain-containing protein -
  BTG_RS07075 (BTG_07310) - 1409847..1411040 (-) 1194 WP_000803130.1 AimR family lysis-lysogeny pheromone receptor -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 9986.60 Da        Isoelectric Point: 5.7319

>NTDB_id=52418 BTG_RS07040 WP_000799040.1 1406143..1406421(-) (abrB) [Bacillus thuringiensis HD-771]
MKNTGIVRKVDELGRVVIPVELRRTLGIAEGAAIGFHVEGGNIVLRKEEKSCFVTGEVSESNIELLGGRMVLSKEGASEL
LDLLQKNVMEHA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=52418 BTG_RS07040 WP_000799040.1 1406143..1406421(-) (abrB) [Bacillus thuringiensis HD-771]
ATGAAAAACACAGGTATTGTAAGAAAAGTCGACGAGTTAGGGCGCGTAGTAATTCCAGTAGAGTTGCGTAGAACTTTAGG
GATAGCTGAAGGTGCAGCAATAGGTTTTCATGTCGAAGGGGGAAATATCGTTTTAAGAAAAGAGGAAAAATCATGCTTTG
TAACGGGGGAAGTGTCTGAATCCAACATCGAATTGTTAGGCGGCCGAATGGTTTTGAGTAAGGAAGGGGCAAGTGAGTTG
TTGGACCTTCTTCAAAAGAATGTGATGGAACATGCTTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(52-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.77

94.565

0.565

Multiple sequence alignment