Detailed information NTG0052418

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: U471_RS16880
• Genome accession: NC_022653
• Coordinates: 3497937..3499067 (-)
• Length: 376 a.a.
• NCBI ID: WP_007407584.1
• Uniprot ID: A7Z9N9
• Organism: Bacillus amyloliquefaciens CC178
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3492937..3504067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U471_RS16850 (U471_35190)	-	3493780..3494184 (-)	405	WP_007614341.1	Rrf2 family transcriptional regulator	-
U471_RS16855 (U471_35200)	ureC	3494325..3496034 (-)	1710	WP_012118651.1	urease subunit alpha	-
U471_RS16860 (U471_35210)	ureB	3496031..3496405 (-)	375	WP_012118652.1	urease subunit beta	-
U471_RS16865 (U471_35220)	ureA	3496402..3496719 (-)	318	WP_007407581.1	urease subunit gamma	-
U471_RS16870 (U471_35230)	-	3497073..3497261 (-)	189	WP_012118653.1	CsbD family protein	-
U471_RS16875 (U471_35240)	-	3497336..3497815 (-)	480	WP_012118654.1	hypothetical protein	-
U471_RS16880 (U471_35250)	rapC	3497937..3499067 (-)	1131	WP_007407584.1	tetratricopeptide repeat protein	Regulator
U471_RS16885 (U471_35260)	moaA	3499258..3500283 (-)	1026	WP_012118655.1	GTP 3',8-cyclase MoaA	-
U471_RS16890 (U471_35270)	fdhD	3500301..3501089 (-)	789	WP_012118656.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
U471_RS19995 (U471_35280)	-	3501184..3501348 (-)	165	WP_007407587.1	hypothetical protein	-
U471_RS16895 (U471_35290)	-	3501434..3502114 (-)	681	WP_012118657.1	VWA domain-containing protein	-
U471_RS16900 (U471_35320)	-	3502424..3503110 (-)	687	WP_007407590.1	VWA domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44934.03 Da
• Isoelectric Point: 5.3221

>NTDB_id=52418 U471_RS16880 WP_007407584.1 3497937..3499067(-) (rapC) [Bacillus amyloliquefaciens CC178]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=52418 U471_RS16880 WP_007407584.1 3497937..3499067(-) (rapC) [Bacillus amyloliquefaciens CC178]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTATGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTCTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATCTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTTCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGGTCATGATCGCGAAAGAACGGGGCG
ATCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (192-251)

3D structure

• AlphaFold DB: A7Z9N9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.842	100	0.423
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399