Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   J6O11_RS23005 Genome accession   NZ_CP081774
Coordinates   4713280..4714305 (+) Length   341 a.a.
NCBI ID   WP_123282546.1    Uniprot ID   -
Organism   Escherichia coli strain 0H24     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4708280..4719305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O11_RS22995 (J6O11_22920) rpmE 4710511..4710723 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  J6O11_RS23000 (J6O11_22925) priA 4710926..4713124 (+) 2199 WP_001295520.1 primosomal protein N' Machinery gene
  J6O11_RS23005 (J6O11_22930) cytR 4713280..4714305 (+) 1026 WP_123282546.1 DNA-binding transcriptional regulator CytR Regulator
  J6O11_RS23010 (J6O11_22935) ftsN 4714397..4715356 (+) 960 WP_000068828.1 cell division protein FtsN -
  J6O11_RS23015 (J6O11_22940) hslV 4715449..4715979 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  J6O11_RS23020 (J6O11_22945) hslU 4715989..4717320 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  J6O11_RS23025 (J6O11_22950) menA 4717387..4718313 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  J6O11_RS23030 (J6O11_22955) rraA 4718406..4718891 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  J6O11_RS23035 (J6O11_22960) zapB 4718976..4719221 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37782.70 Da        Isoelectric Point: 6.3001

>NTDB_id=524006 J6O11_RS23005 WP_123282546.1 4713280..4714305(+) (cytR) [Escherichia coli strain 0H24]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVIANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKHQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=524006 J6O11_RS23005 WP_123282546.1 4713280..4714305(+) (cytR) [Escherichia coli strain 0H24]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATAGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACACCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.582

98.24

0.625
  cytR Vibrio cholerae C6706

64.832

95.894

0.622