Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   U471_RS13620 Genome accession   NC_022653
Coordinates   2857664..2858359 (-) Length   231 a.a.
NCBI ID   WP_012118241.1    Uniprot ID   A7Z7W5
Organism   Bacillus amyloliquefaciens CC178     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2852664..2863359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS13600 (U471_28470) - 2853046..2853765 (-) 720 WP_012118237.1 TIGR02206 family membrane protein -
  U471_RS13605 (U471_28490) - 2853872..2855812 (-) 1941 WP_012118238.1 FtsX-like permease family protein -
  U471_RS13610 (U471_28500) - 2855809..2856564 (-) 756 WP_015240420.1 ABC transporter ATP-binding protein -
  U471_RS13615 (U471_28510) - 2856667..2857671 (-) 1005 WP_012118240.1 sensor histidine kinase -
  U471_RS13620 (U471_28520) braR 2857664..2858359 (-) 696 WP_012118241.1 response regulator transcription factor Regulator
  U471_RS13625 (U471_28530) - 2858423..2859733 (-) 1311 WP_012118242.1 ABC transporter permease -
  U471_RS13630 (U471_28540) - 2859723..2860418 (-) 696 WP_007408816.1 ABC transporter ATP-binding protein -
  U471_RS13635 (U471_28550) - 2860434..2861414 (-) 981 WP_012118244.1 hypothetical protein -
  U471_RS13640 (U471_28560) - 2861451..2862437 (-) 987 WP_012118245.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26867.13 Da        Isoelectric Point: 7.1197

>NTDB_id=52398 U471_RS13620 WP_012118241.1 2857664..2858359(-) (braR) [Bacillus amyloliquefaciens CC178]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFTEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLEQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=52398 U471_RS13620 WP_012118241.1 2857664..2858359(-) (braR) [Bacillus amyloliquefaciens CC178]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCATGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAAGATTTCAGCCGGGTCATCCGGGAGTTTACCGAAATCAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCATCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GAGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAGCTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGCCGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGAACAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z7W5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385