Detailed information NTG0523869

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J6O59_RS05345
• Genome accession: NZ_CP081767
• Coordinates: 1091988..1092980 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 0H18
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1086988..1097980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6O59_RS05315 (J6O59_05290)	ispD	1087049..1087759 (+)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J6O59_RS05320 (J6O59_05295)	ispF	1087759..1088238 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J6O59_RS05325 (J6O59_05300)	truD	1088235..1089284 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
J6O59_RS05330 (J6O59_05305)	surE	1089265..1090026 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J6O59_RS05335 (J6O59_05310)	pcm	1090020..1090646 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J6O59_RS05340 (J6O59_05315)	nlpD	1090831..1091925 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
J6O59_RS05345 (J6O59_05320)	rpoS	1091988..1092980 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J6O59_RS05350 (J6O59_05325)	ygbN	1093074..1094438 (-)	1365	WP_000104466.1	GntP family transporter	-
J6O59_RS05355 (J6O59_05330)	ygbM	1094527..1095303 (-)	777	WP_001136936.1	HPr family phosphocarrier protein	-
J6O59_RS05360 (J6O59_05335)	ygbL	1095308..1095946 (-)	639	WP_001278994.1	aldolase	-
J6O59_RS05365 (J6O59_05340)	otnK	1095943..1097205 (-)	1263	WP_000590398.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=523869 J6O59_RS05345 WP_000081550.1 1091988..1092980(+) (rpoS) [Escherichia coli strain 0H18]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=523869 J6O59_RS05345 WP_000081550.1 1091988..1092980(+) (rpoS) [Escherichia coli strain 0H18]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715