Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ECENHK_RS21795 Genome accession   NC_018405
Coordinates   4590295..4591815 (+) Length   506 a.a.
NCBI ID   WP_014885679.1    Uniprot ID   -
Organism   Enterobacter kobei     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4585295..4596815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECENHK_RS21780 (ECENHK_21480) ilvE 4586862..4587791 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  ECENHK_RS21785 (ECENHK_21485) ilvM 4587810..4588073 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  ECENHK_RS21790 (ECENHK_21490) ilvG 4588070..4589716 (-) 1647 WP_014885678.1 acetolactate synthase 2 catalytic subunit -
  ECENHK_RS23095 ilvL 4589855..4589953 (-) 99 WP_001311244.1 ilv operon leader peptide -
  ECENHK_RS21795 (ECENHK_21495) comM 4590295..4591815 (+) 1521 WP_014885679.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ECENHK_RS21800 (ECENHK_21500) - 4591845..4592183 (-) 339 WP_014885680.1 DUF413 domain-containing protein -
  ECENHK_RS21805 (ECENHK_21505) hdfR 4592302..4593123 (+) 822 WP_014885681.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55069.12 Da        Isoelectric Point: 7.3092

>NTDB_id=52369 ECENHK_RS21795 WP_014885679.1 4590295..4591815(+) (comM) [Enterobacter kobei]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELSEPEECDNIIADTPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQKGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNMEDAVWLEETLTRFGLSIRAWQRLLKVARTIADVEGCSDI
QRKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=52369 ECENHK_RS21795 WP_014885679.1 4590295..4591815(+) (comM) [Enterobacter kobei]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATCTGAGTAA
TGGGCTACCCGGGCTCACGCTCGTCGGGCTACCTGAAACGACGGTTAAAGAAGCCCGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTGGCTCCCGCCGATCTGCCCAAAGAGGGAGGACGA
TATGATTTACCTATCGCGATTGCGCTTCTCGCAGCCTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTACGAGTTTGT
GGGAGAACTCGCGCTCACAGGCGCGTTAAGGGGCGTTCCCGGTGCGATATCGGGCGCGCTGGAAGCTATACGTGCAGGAC
GGCAAATCATTGTCGCGAATGAAAATGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTTGTCGCAGGGCATTTA
CAGGAAGTTTGCGCCTGGCTGGAAGGGCGCCATGAACTGTCCGAGCCGGAAGAGTGTGACAATATTATAGCCGATACCCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TGTTGATTGGCCCGCCTGGTACGGGTAAAACGATGCTGGCAAGCAGGCTGAGTGGCTTGCTGCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATTTATAGCCTTATCAGTTCTACCTCCTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCACCTCATCATAGCGCTTCACTGACGGCGATGGTCGGCGGTGGGTCTATTCCCGGGCCGGGTGAAATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGACGAGCTGCCTGAGTTTGAGCGCCGCGTCCTGGATGCCCTGAGAGAACCCATTGAATCT
GGAGAGATACACATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCTGCGATGAATCCCAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGAAAGTTATCCGGCC
CGTTTCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGCCTGCTCAGGCAAAAAGGCATCACGGGT
GAAAGCTCAGCAGATGTACGCGAGCGGGTCATTGCTGCCCAGACGCGACAATATGCCCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACATGGAGGATGCGGTTTGGCTGGAGGAAACCTTGACGCGTT
TTGGTCTTTCTATACGCGCGTGGCAGCGTTTGCTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGTTGTAGTGACATT
CAGAGGAAACACTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTCCATCTGCAGAAGTTGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443

Multiple sequence alignment