Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   J6O12_RS23040 Genome accession   NZ_CP081724
Coordinates   4702493..4703518 (+) Length   341 a.a.
NCBI ID   WP_000644903.1    Uniprot ID   -
Organism   Escherichia coli strain CX07     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4697493..4708518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O12_RS23030 (J6O12_22965) rpmE 4699724..4699936 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  J6O12_RS23035 (J6O12_22970) priA 4700139..4702337 (+) 2199 WP_001295520.1 primosomal protein N' Machinery gene
  J6O12_RS23040 (J6O12_22975) cytR 4702493..4703518 (+) 1026 WP_000644903.1 DNA-binding transcriptional regulator CytR Regulator
  J6O12_RS23045 (J6O12_22980) ftsN 4703610..4704569 (+) 960 WP_000068828.1 cell division protein FtsN -
  J6O12_RS23050 (J6O12_22985) hslV 4704662..4705192 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  J6O12_RS23055 (J6O12_22990) hslU 4705202..4706533 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  J6O12_RS23060 (J6O12_22995) menA 4706600..4707526 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  J6O12_RS23065 (J6O12_23000) rraA 4707619..4708104 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  J6O12_RS23070 (J6O12_23005) zapB 4708189..4708434 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37800.74 Da        Isoelectric Point: 6.3001

>NTDB_id=523668 J6O12_RS23040 WP_000644903.1 4702493..4703518(+) (cytR) [Escherichia coli strain CX07]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKHQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=523668 J6O12_RS23040 WP_000644903.1 4702493..4703518(+) (cytR) [Escherichia coli strain CX07]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACACCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625