Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J6O12_RS09475 Genome accession   NZ_CP081724
Coordinates   1966777..1968204 (-) Length   475 a.a.
NCBI ID   WP_000980601.1    Uniprot ID   -
Organism   Escherichia coli strain CX07     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1961777..1973204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O12_RS09445 (J6O12_09420) yeeZ 1961832..1962656 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  J6O12_RS09450 (J6O12_09425) yeeY 1962702..1963631 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  J6O12_RS09455 (J6O12_09430) yoeI 1963846..1963908 (+) 63 WP_010723108.1 membrane protein YoeI -
  J6O12_RS09460 (J6O12_09435) plaP 1963898..1965256 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J6O12_RS09465 (J6O12_09440) tsuA 1965435..1966493 (+) 1059 WP_000492297.1 thiosulfate utilization transporter TsuA/YeeE -
  J6O12_RS09470 (J6O12_09445) tsuB 1966507..1966734 (+) 228 WP_000985279.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J6O12_RS09475 (J6O12_09450) sbcB 1966777..1968204 (-) 1428 WP_000980601.1 exodeoxyribonuclease I Machinery gene
  J6O12_RS09480 (J6O12_09455) dacD 1968413..1969579 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J6O12_RS09485 (J6O12_09460) - 1969726..1972209 (-) 2484 WP_000069320.1 phage tail tape measure protein -
  J6O12_RS09490 (J6O12_09465) - 1972241..1972834 (-) 594 WP_000805615.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54428.71 Da        Isoelectric Point: 5.4700

>NTDB_id=523630 J6O12_RS09475 WP_000980601.1 1966777..1968204(-) (sbcB) [Escherichia coli strain CX07]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=523630 J6O12_RS09475 WP_000980601.1 1966777..1968204(-) (sbcB) [Escherichia coli strain CX07]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583