Detailed information NTG0523615

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J6O12_RS05455
• Genome accession: NZ_CP081724
• Coordinates: 1113372..1114364 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CX07
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1108372..1119364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6O12_RS05425 (J6O12_05410)	ispD	1108433..1109143 (+)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J6O12_RS05430 (J6O12_05415)	ispF	1109143..1109622 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J6O12_RS05435 (J6O12_05420)	truD	1109619..1110668 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
J6O12_RS05440 (J6O12_05425)	surE	1110649..1111410 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J6O12_RS05445 (J6O12_05430)	pcm	1111404..1112030 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J6O12_RS05450 (J6O12_05435)	nlpD	1112215..1113309 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
J6O12_RS05455 (J6O12_05440)	rpoS	1113372..1114364 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J6O12_RS05460 (J6O12_05445)	ygbN	1114458..1115822 (-)	1365	WP_000104466.1	GntP family transporter	-
J6O12_RS05465 (J6O12_05450)	ygbM	1115911..1116687 (-)	777	WP_001136936.1	HPr family phosphocarrier protein	-
J6O12_RS05470 (J6O12_05455)	ygbL	1116692..1117330 (-)	639	WP_001278994.1	aldolase	-
J6O12_RS05475 (J6O12_05460)	otnK	1117327..1118589 (-)	1263	Protein_1080	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=523615 J6O12_RS05455 WP_000081550.1 1113372..1114364(+) (rpoS) [Escherichia coli strain CX07]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=523615 J6O12_RS05455 WP_000081550.1 1113372..1114364(+) (rpoS) [Escherichia coli strain CX07]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715