Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J6O07_RS06145 Genome accession   NZ_CP081713
Coordinates   1243798..1244535 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CX04     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1238798..1249535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O07_RS06115 (J6O07_06105) yfiL 1238955..1239320 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  J6O07_RS06120 (J6O07_06110) aroF 1239530..1240600 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J6O07_RS06125 (J6O07_06115) tyrA 1240611..1241732 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J6O07_RS06130 (J6O07_06120) pheA 1241775..1242935 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  J6O07_RS06135 (J6O07_06125) pheL 1243035..1243082 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J6O07_RS06140 (J6O07_06130) raiA 1243186..1243527 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J6O07_RS06145 (J6O07_06135) comL 1243798..1244535 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J6O07_RS06150 (J6O07_06140) rluD 1244670..1245650 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J6O07_RS06155 (J6O07_06145) yfiH 1245647..1246378 (+) 732 WP_000040142.1 purine nucleoside phosphorylase YfiH -
  J6O07_RS06160 (J6O07_06150) clpC 1246508..1249081 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=523449 J6O07_RS06145 WP_000197686.1 1243798..1244535(-) (comL) [Escherichia coli strain CX04]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=523449 J6O07_RS06145 WP_000197686.1 1243798..1244535(-) (comL) [Escherichia coli strain CX04]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376