Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   U471_RS06205 Genome accession   NC_022653
Coordinates   1211260..1212396 (+) Length   378 a.a.
NCBI ID   WP_087920760.1    Uniprot ID   A7Z3N2
Organism   Bacillus amyloliquefaciens CC178     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1206260..1217396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS06185 (U471_12450) - 1206709..1208154 (+) 1446 WP_012117355.1 tagaturonate reductase -
  U471_RS06190 (U471_12460) - 1208151..1209644 (+) 1494 WP_012117356.1 UxaA family hydrolase -
  U471_RS06195 (U471_12470) - 1209678..1210442 (-) 765 WP_007610763.1 sulfite exporter TauE/SafE family protein -
  U471_RS06200 (U471_12480) - 1210587..1211054 (-) 468 WP_012117357.1 DinB family protein -
  U471_RS06205 (U471_12490) rapC 1211260..1212396 (+) 1137 WP_087920760.1 Rap family tetratricopeptide repeat protein Regulator
  U471_RS19675 (U471_12500) - 1212386..1212520 (+) 135 WP_012117358.1 PhrA family phosphatase inhibitor -
  U471_RS06215 (U471_12510) - 1212663..1213616 (+) 954 WP_003154880.1 N-acetylmuramoyl-L-alanine amidase -
  U471_RS06220 (U471_12520) - 1213654..1214031 (-) 378 WP_007610770.1 PH domain-containing protein -
  U471_RS06225 (U471_12530) - 1214142..1214747 (+) 606 WP_012117359.1 poly-gamma-glutamate hydrolase family protein -
  U471_RS06230 (U471_12540) - 1214866..1215456 (-) 591 WP_007610775.1 ImmA/IrrE family metallo-endopeptidase -
  U471_RS06235 (U471_12560) xre 1215605..1215943 (-) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  U471_RS06240 (U471_12570) - 1216134..1216313 (+) 180 WP_007407285.1 hypothetical protein -
  U471_RS06245 (U471_12590) - 1216303..1217131 (+) 829 Protein_1194 phage portal protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45073.28 Da        Isoelectric Point: 4.9159

>NTDB_id=52333 U471_RS06205 WP_087920760.1 1211260..1212396(+) (rapC) [Bacillus amyloliquefaciens CC178]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=52333 U471_RS06205 WP_087920760.1 1211260..1212396(+) (rapC) [Bacillus amyloliquefaciens CC178]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTGAATCTGTTCCAATTTTTACATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z3N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426

Multiple sequence alignment