Detailed information NTG0052306

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: U471_RS02285
• Genome accession: NC_022653
• Coordinates: 456824..457957 (+)
• Length: 377 a.a.
• NCBI ID: WP_012116843.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens CC178
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 451824..462957

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U471_RS02260 (U471_04250)	-	452414..452860 (+)	447	WP_012116838.1	NUDIX hydrolase	-
U471_RS02265 (U471_04260)	-	452918..454639 (+)	1722	WP_012116839.1	pyruvate oxidase	-
U471_RS02270 (U471_04270)	-	454755..455191 (-)	437	Protein_411	N-acetyltransferase family protein	-
U471_RS20035	-	455300..455421 (+)	122	Protein_412	peptidoglycan-binding domain-containing protein	-
U471_RS02275 (U471_04290)	-	455628..455840 (-)	213	WP_012116841.1	spore germination protein	-
U471_RS20040 (U471_04300)	-	456222..456515 (+)	294	WP_023356715.1	hypothetical protein	-
U471_RS19095	-	456484..456687 (+)	204	WP_077411029.1	DUF2651 family protein	-
U471_RS02285 (U471_04310)	rapC	456824..457957 (+)	1134	WP_012116843.1	Rap family tetratricopeptide repeat protein	Regulator
U471_RS20180	-	457954..458088 (+)	135	WP_007609509.1	hypothetical protein	-
U471_RS20045 (U471_04320)	-	458439..458669 (-)	231	WP_012116845.1	hypothetical protein	-
U471_RS02300 (U471_04340)	-	459050..459607 (-)	558	WP_012116846.1	hypothetical protein	-
U471_RS19910	-	459704..460282 (-)	579	WP_012116847.1	hypothetical protein	-
U471_RS02310 (U471_04370)	-	460508..460774 (-)	267	WP_012116848.1	hypothetical protein	-
U471_RS02315 (U471_04380)	-	460879..462156 (-)	1278	WP_123912783.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44756.16 Da
• Isoelectric Point: 5.3016

>NTDB_id=52306 U471_RS02285 WP_012116843.1 456824..457957(+) (rapC) [Bacillus amyloliquefaciens CC178]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELSAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLEEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAIS

Nucleotide

• Length: 1134 bp

>NTDB_id=52306 U471_RS02285 WP_012116843.1 456824..457957(+) (rapC) [Bacillus amyloliquefaciens CC178]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTTTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATCGAGATCGCCCCACAGTCGAC
GAACTACTTGAAAAAATAGAAAAGCCGCAAAAAAGACTTACAGGCCTCTTGAAGTATTACTCATTATTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAGTGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGGTTGG
AAGAGGAAAAAGTGAAAAGAATTATCGGAGTGATTTTTCATAACTTAGGTTTAGTTTATTTAAGAGGGAAAAATTTAATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGTGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGATAAAGCAAAGGAAGCGCGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAAAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATCATGA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (142-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.802	98.939	0.374