Detailed information NTG0522984

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: JGZ27_RS10860
• Genome accession: NZ_CP066885
• Coordinates: 2322257..2323660 (-)
• Length: 467 a.a.
• NCBI ID: WP_200264763.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius strain HSP079
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2317257..2328660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JGZ27_RS10835 (JGZ27_10835)	cysE	2317443..2318110 (-)	668	Protein_2114	serine O-acetyltransferase	-
JGZ27_RS10840 (JGZ27_10840)	gltX	2318498..2319955 (-)	1458	Protein_2115	glutamate--tRNA ligase	-
JGZ27_RS10845 (JGZ27_10845)	ispF	2320032..2320511 (-)	480	WP_014614766.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JGZ27_RS10850 (JGZ27_10850)	ispD	2320504..2321208 (-)	705	WP_200264761.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JGZ27_RS10855 (JGZ27_10855)	-	2321209..2322270 (-)	1062	WP_200264762.1	PIN/TRAM domain-containing protein	-
JGZ27_RS10860 (JGZ27_10860)	radA	2322257..2323660 (-)	1404	WP_200264763.1	DNA repair protein RadA	Machinery gene
JGZ27_RS10865 (JGZ27_10865)	-	2324053..2324805 (-)	753	WP_200264764.1	ABC transporter permease	-
JGZ27_RS10870 (JGZ27_10870)	-	2324792..2325496 (-)	705	WP_200264765.1	ABC transporter ATP-binding protein	-
JGZ27_RS10875 (JGZ27_10875)	-	2325511..2326470 (-)	960	WP_230314569.1	hypothetical protein	-
JGZ27_RS10880 (JGZ27_10880)	-	2326470..2327285 (-)	816	WP_200264766.1	SagB family peptide dehydrogenase	-
JGZ27_RS10885 (JGZ27_10885)	-	2327305..2328528 (-)	1224	WP_200264767.1	YcaO-like family protein	-

Sequence

Protein

• Length: 467 a.a.
• Molecular weight: 51430.56 Da
• Isoelectric Point: 7.0055

>NTDB_id=522984 JGZ27_RS10860 WP_200264763.1 2322257..2323660(-) (radA) [Staphylococcus pseudintermedius strain HSP079]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLDDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAXARLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEATKLGFKRVIIPKNNIGGWHFPEGIEVIGVTSVNEALKYALXKLERRDDRGGFY

Nucleotide

• Length: 1404 bp

>NTDB_id=522984 JGZ27_RS10860 WP_200264763.1 2322257..2323660(-) (radA) [Staphylococcus pseudintermedius strain HSP079]
GTGGCAAAAACGAAAACAATTTTTGAATGTACGGCCTGTGGTTATCAATCGCCTAAATGGATGGGGAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTACGGGCGCAAAAAACAA
GTTCAGCAAAAATACAAAAGCTCGATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGAATAGGGAAGTCCACATTGTT
ACTTCAAATGTGCGCGGCTTTATCTAAAGAGAAAAGGGTGCTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTGGATGAAGATGCGAGTCAACTTAACGTGTTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAACCTGATTTAATTGTAGTGGACTCTATTCAGACGATCTACCATCCCGAAATCAGTTCGGCGCCTGG
CTCTGTATCTCAAGTTCGTGAAAGTACACAAAGCTTGATGCACATCGCAAAACAAATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATCGCGNGGGCGCGTTTACTTGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAAT
GAAACAGTCAGGTTTAAAAAGCGTGCTTAACCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTCGCAACGATGGAAGGGACACGACCATTGTTAATTGAAGTACAAGCGCTTGTCACACCGACGACGTTCAATAAT
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTAATGGCGGTGTTAGAGAAAAAAGAAGGTTATTT
ATTACAACAACAAGACGCTTACATTAAGGTGGCAGGGGGCGTCAAACTCTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCCTCGATTGTTATATTGGCGAGGTTGGGTTGACTGGTGAG
GTCCGCCGTGTTTCGCGCATTGAGCAACGTGTGCAAGAAGCGACAAAATTGGGCTTTAAACGTGTGATTATCCCTAAAAA
CAATATTGGCGGATGGCACTTCCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAATACGCAT
TANAAAAATTAGAAAGGAGGGATGATAGAGGTGGATTTTATTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (71-220)

• Subunit ChlI of Mg-chelatase (ChlI) (345-428)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	65.132	97.645	0.636
radA	Streptococcus pneumoniae Rx1	57.965	96.788	0.561
radA	Streptococcus pneumoniae D39	57.965	96.788	0.561
radA	Streptococcus pneumoniae R6	57.965	96.788	0.561
radA	Streptococcus pneumoniae TIGR4	57.965	96.788	0.561
radA	Streptococcus mitis NCTC 12261	57.965	96.788	0.561
radA	Streptococcus mitis SK321	57.965	96.788	0.561