Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JGZ27_RS03740 Genome accession   NZ_CP066885
Coordinates   845166..845882 (-) Length   238 a.a.
NCBI ID   WP_200265296.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain HSP079     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 840166..850882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ27_RS12215 - 841219..841333 (-) 115 Protein_733 ribose transporter RbsU -
  JGZ27_RS03725 (JGZ27_03725) - 841671..842618 (+) 948 WP_063278589.1 LacI family DNA-binding transcriptional regulator -
  JGZ27_RS03730 (JGZ27_03730) - 842674..844158 (+) 1485 WP_187470855.1 sucrose-6-phosphate hydrolase -
  JGZ27_RS03735 (JGZ27_03735) - 844162..845106 (+) 945 WP_200265295.1 carbohydrate kinase -
  JGZ27_RS03740 (JGZ27_03740) agrA 845166..845882 (-) 717 WP_200265296.1 LytTR family DNA-binding domain-containing protein Regulator
  JGZ27_RS03745 (JGZ27_03745) - 845896..846759 (-) 864 WP_233276610.1 sensor histidine kinase -
  JGZ27_RS03750 (JGZ27_03750) - 847211..847348 (-) 138 WP_020219911.1 cyclic lactone autoinducer peptide -
  JGZ27_RS03755 (JGZ27_03755) - 847350..847916 (-) 567 WP_200265297.1 accessory gene regulator AgrB -
  JGZ27_RS03765 (JGZ27_03765) - 848675..849481 (-) 807 WP_200265298.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28083.25 Da        Isoelectric Point: 5.6930

>NTDB_id=522966 JGZ27_RS03740 WP_200265296.1 845166..845882(-) (agrA) [Staphylococcus pseudintermedius strain HSP079]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGRYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVVAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=522966 JGZ27_RS03740 WP_200265296.1 845166..845882(-) (agrA) [Staphylococcus pseudintermedius strain HSP079]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GTCGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGTCGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACCAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.353

100

0.824