Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JGZ15_RS10855 Genome accession   NZ_CP066884
Coordinates   2322081..2323484 (-) Length   467 a.a.
NCBI ID   WP_200360700.1    Uniprot ID   A0A7T7NXN7
Organism   Staphylococcus pseudintermedius strain HSP080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2317081..2328484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ15_RS10830 (JGZ15_10830) cysE 2317270..2317937 (-) 668 Protein_2112 serine O-acetyltransferase -
  JGZ15_RS10835 (JGZ15_10835) gltX 2318325..2319782 (-) 1458 WP_200360695.1 glutamate--tRNA ligase -
  JGZ15_RS10840 (JGZ15_10840) ispF 2319859..2320338 (-) 480 WP_014614766.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JGZ15_RS10845 (JGZ15_10845) ispD 2320331..2321032 (-) 702 WP_200360696.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JGZ15_RS10850 (JGZ15_10850) - 2321033..2322094 (-) 1062 WP_200360698.1 PIN/TRAM domain-containing protein -
  JGZ15_RS10855 (JGZ15_10855) radA 2322081..2323484 (-) 1404 WP_200360700.1 DNA repair protein RadA Machinery gene
  JGZ15_RS10860 (JGZ15_10860) - 2323877..2324623 (-) 747 WP_200360702.1 ABC transporter permease -
  JGZ15_RS12430 - 2324610..2324912 (-) 303 WP_242463135.1 hypothetical protein -
  JGZ15_RS12435 - 2324909..2325313 (-) 405 WP_242463136.1 ATP-binding cassette domain-containing protein -
  JGZ15_RS10870 (JGZ15_10870) - 2325328..2326287 (-) 960 WP_230314569.1 hypothetical protein -
  JGZ15_RS10875 (JGZ15_10875) - 2326287..2327099 (-) 813 WP_200360704.1 SagB family peptide dehydrogenase -
  JGZ15_RS10880 (JGZ15_10880) - 2327119..2328342 (-) 1224 WP_200264767.1 YcaO-like family protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51394.76 Da        Isoelectric Point: 7.0055

>NTDB_id=522957 JGZ15_RS10855 WP_200360700.1 2322081..2323484(-) (radA) [Staphylococcus pseudintermedius strain HSP080]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLDDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEATKLGFKRVIIPKNNIGGWHFPEGIEVIGVTSVNEALKYALXKLERRDDRGGFY

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=522957 JGZ15_RS10855 WP_200360700.1 2322081..2323484(-) (radA) [Staphylococcus pseudintermedius strain HSP080]
GTGGCAAAAACGAAAACAATTTTTGAATGTACGGCCTGTGGTTATCAATCGCCTAAATGGATGGGGAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTACGGGCGCAAAAAACAA
GTTCAGCAAAAATACAAAAGCTCGATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGAATAGGGAAGTCCACATTGTT
ACTTCAAATGTGCGCGGCTTTATCTAAAGAGAAAAGGGTGCTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTGGATGAAGATGCGAGTCAACTTAACGTGTTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAACCTGATTTAATTGTAGTGGACTCTATTCAGACGATCTACCATCCCGAAATCAGTTCGGCGCCTGG
CTCTGTATCTCAAGTTCGTGAAAGTACACAAAGCTTGATGCACATCGCAAAACAAATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATCGCGGGGCCGCGTTTACTTGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAAT
GAAACAGTCAGGTTTAAAAAGCGTGCTTAACCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTCGCAACGATGGAAGGGACACGACCATTGTTAATTGAAGTACAAGCGCTTGTCACACCGACGACGTTCAATAAT
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTAATGGCGGTGTTAGAGAAAAAAGAAGGTTATTT
ATTACAACAACAAGACGCTTACATTAAGGTGGCAGGGGGCGTCAAACTCTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCCTCGATTGTTATATTGGCGAGGTTGGGTTGACTGGTGAG
GTCCGCCGTGTTTCGCGCATTGAGCAACGTGTGCAAGAAGCGACAAAATTGGGCTTTAAACGTGTGATTATCCCTAAAAA
CAATATTGGCGGATGGCACTTCCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAATACGCAT
TANAAAAATTAGAAAGGAGGGATGATAGAGGTGGATTTTATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

97.645

0.64
  radA Streptococcus pneumoniae Rx1

58.407

96.788

0.565
  radA Streptococcus pneumoniae D39

58.407

96.788

0.565
  radA Streptococcus pneumoniae R6

58.407

96.788

0.565
  radA Streptococcus pneumoniae TIGR4

58.407

96.788

0.565
  radA Streptococcus mitis NCTC 12261

58.407

96.788

0.565
  radA Streptococcus mitis SK321

58.407

96.788

0.565