Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J6O16_RS05625 Genome accession   NZ_CP081684
Coordinates   1146626..1147141 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 0H23     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1141626..1152141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O16_RS05580 (J6O16_05570) csrA 1142213..1142398 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  J6O16_RS05610 (J6O16_05600) yqaB 1143856..1144422 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  J6O16_RS05615 (J6O16_05605) yqaA 1144419..1144847 (+) 429 WP_001287454.1 YqaA family protein -
  J6O16_RS05620 (J6O16_05610) gshA 1144920..1146476 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  J6O16_RS05625 (J6O16_05615) luxS 1146626..1147141 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  J6O16_RS05630 (J6O16_05620) - 1147299..1148450 (-) 1152 WP_001254932.1 IS30-like element IS30 family transposase -
  J6O16_RS05635 (J6O16_05625) emrB 1148512..1149966 (-) 1455 Protein_1106 multidrug efflux MFS transporter permease subunit EmrB -
  J6O16_RS05640 (J6O16_05630) emrA 1149983..1151155 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  J6O16_RS05645 (J6O16_05635) emrR 1151282..1151812 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=522953 J6O16_RS05625 WP_001130211.1 1146626..1147141(+) (luxS) [Escherichia coli strain 0H23]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=522953 J6O16_RS05625 WP_001130211.1 1146626..1147141(+) (luxS) [Escherichia coli strain 0H23]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731