Detailed information NTG0522950

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J6O16_RS05335
• Genome accession: NZ_CP081684
• Coordinates: 1091989..1092981 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 0H23
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1086989..1097981

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6O16_RS05305 (J6O16_05295)	ispD	1087050..1087760 (+)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J6O16_RS05310 (J6O16_05300)	ispF	1087760..1088239 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J6O16_RS05315 (J6O16_05305)	truD	1088236..1089285 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
J6O16_RS05320 (J6O16_05310)	surE	1089266..1090027 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J6O16_RS05325 (J6O16_05315)	pcm	1090021..1090647 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J6O16_RS05330 (J6O16_05320)	nlpD	1090832..1091926 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
J6O16_RS05335 (J6O16_05325)	rpoS	1091989..1092981 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J6O16_RS05340 (J6O16_05330)	ygbN	1093075..1094439 (-)	1365	WP_000104466.1	GntP family transporter	-
J6O16_RS05345 (J6O16_05335)	ygbM	1094528..1095304 (-)	777	WP_001136936.1	HPr family phosphocarrier protein	-
J6O16_RS05350 (J6O16_05340)	ygbL	1095309..1095947 (-)	639	WP_001278994.1	aldolase	-
J6O16_RS05355 (J6O16_05345)	otnK	1095944..1097206 (-)	1263	WP_000590398.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=522950 J6O16_RS05335 WP_000081550.1 1091989..1092981(+) (rpoS) [Escherichia coli strain 0H23]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=522950 J6O16_RS05335 WP_000081550.1 1091989..1092981(+) (rpoS) [Escherichia coli strain 0H23]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715