Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JCR23_RS07550 Genome accession   NZ_CP066883
Coordinates   1662966..1664312 (+) Length   448 a.a.
NCBI ID   WP_024568384.1    Uniprot ID   X5K7C2
Organism   Elizabethkingia sp. M8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1657966..1669312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR23_RS07530 (JCR23_07530) - 1658502..1659071 (+) 570 WP_185264795.1 ribonuclease HII -
  JCR23_RS07535 (JCR23_07535) - 1659143..1659280 (+) 138 WP_021347346.1 bacteriocin -
  JCR23_RS07540 (JCR23_07540) yidC 1659367..1661121 (-) 1755 WP_200403274.1 membrane protein insertase YidC -
  JCR23_RS07545 (JCR23_07545) - 1661130..1662749 (-) 1620 WP_200403275.1 CTP synthase -
  JCR23_RS07550 (JCR23_07550) radA 1662966..1664312 (+) 1347 WP_024568384.1 DNA repair protein RadA Machinery gene
  JCR23_RS07555 (JCR23_07555) - 1664333..1665487 (+) 1155 WP_185264797.1 helix-turn-helix domain-containing protein -
  JCR23_RS07560 (JCR23_07560) - 1665490..1666170 (+) 681 WP_009084917.1 class I SAM-dependent methyltransferase -
  JCR23_RS07565 (JCR23_07565) - 1666177..1666881 (+) 705 WP_009084915.1 VanW family protein -
  JCR23_RS07570 (JCR23_07570) - 1667268..1668101 (+) 834 WP_185264798.1 SDR family oxidoreductase -
  JCR23_RS07575 (JCR23_07575) - 1668098..1669072 (+) 975 WP_200403276.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49845.33 Da        Isoelectric Point: 6.7597

>NTDB_id=522925 JCR23_RS07550 WP_024568384.1 1662966..1664312(+) (radA) [Elizabethkingia sp. M8]
MAKVKTAYYCQNCGTQYPQWHGQCKNCGEWNTLVEEVIEKSTSKNYSGEKKQHIINIIEVNAQEEPRITTPSDELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMRKRVLYVSGEESASQIKMRADRLTDLQNPECFLFTETSVDKILHEAKKLQ
PQFMILDSIQTLHSSLIESSPGTVSQIRECSSEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSC
TGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEKYCFAGEIGLSGEIRPVP
QIEHRITEAEKLGYDKIYVSNLNKIPKRKFAIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=522925 JCR23_RS07550 WP_024568384.1 1662966..1664312(+) (radA) [Elizabethkingia sp. M8]
GTGGCAAAGGTCAAAACGGCATATTACTGTCAAAATTGCGGAACTCAGTATCCGCAGTGGCACGGACAGTGCAAAAATTG
TGGAGAATGGAATACTTTGGTTGAAGAAGTTATAGAAAAATCGACTTCAAAAAATTATTCCGGAGAAAAGAAGCAACATA
TTATTAACATTATCGAGGTCAACGCCCAGGAAGAACCAAGAATTACAACCCCGAGCGATGAGCTGAACCGTGTATTGGGA
GGTGGGATCGTACTAGGTTCTGTTACCTTAATTGGTGGTGAACCGGGAATCGGGAAGTCTACCCTTTTGCTTCAGCTGGC
ACTAAAAATGCGCAAACGTGTTTTGTATGTCTCCGGAGAAGAAAGTGCTTCACAAATTAAAATGCGTGCTGATCGCCTTA
CCGATCTCCAAAATCCGGAGTGCTTCCTTTTTACAGAAACTTCTGTGGACAAGATTCTGCATGAAGCGAAAAAGCTTCAG
CCTCAGTTTATGATTCTGGACTCTATACAGACATTGCATTCCAGCCTTATAGAAAGCTCACCGGGCACAGTTTCTCAGAT
TCGGGAATGTTCTTCAGAAATTATAAAGTTTGCTAAAGAAACCAATACTCCCGTGTTTCTGGTAGGCCATATCACCAAAG
ACGGACAAATTGCAGGTCCGAAAGTTCTGGAACATATGGTGGATGTGGTTCTAAATTTCGATGGCGACAGAAATCACCTT
TTCAGGTTGCTAAGAGCTAATAAAAACCGTTTTGGCTCTACGTCCGAAATTGGTATTTATGAAATGATATCACAGGGGCT
GAAAGAAATTAAAAATCCTTCTGAAATTCTGATTACCAAAAAATTTGAAGAGCTATCCGGTAACTCGGTAGCCGTAACCC
TGGAAGGAAACCGCCCAATGCTACTGGAAATTCAGGCTTTGGTAAGTACTGCTGTCTATGGTACTCCACAGAGAAGCTGC
ACTGGTTTCGATGCAAAAAGACTGAATATGCTTCTGGCAGTATTGGAGAAACGCGCAGGCTTCCAACTTGGGTCGAAAGA
TGTGTTCCTGAATATAACCGGCGGTATCAAAACTGACGATCCGGCACTGGATTTAGCAGTTGTAGCCTCTATTCTGTCTT
CCAATGAAGATATTGCTATTTCCGAGAAGTATTGCTTCGCTGGAGAAATAGGTCTTAGTGGAGAAATACGGCCTGTTCCT
CAGATTGAACACCGGATCACAGAAGCCGAAAAGCTGGGATATGATAAAATCTATGTTTCCAATCTGAATAAAATACCTAA
ACGGAAATTTGCGATAAAGATTGAAGAAGTCAGCAAAATCGAAGATTTCCACGAAAGACTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5K7C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.578

100

0.496
  radA Streptococcus pneumoniae Rx1

48.578

100

0.496
  radA Streptococcus pneumoniae R6

48.578

100

0.496
  radA Streptococcus pneumoniae TIGR4

48.578

100

0.496
  radA Streptococcus mitis NCTC 12261

48.571

100

0.493
  radA Streptococcus mitis SK321

48.352

100

0.491
  radA Bacillus subtilis subsp. subtilis str. 168

49.188

96.205

0.473