Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   U471_RS01160 Genome accession   NC_022653
Coordinates   204985..205668 (+) Length   227 a.a.
NCBI ID   WP_011996229.1    Uniprot ID   A7Z0W1
Organism   Bacillus amyloliquefaciens CC178     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 199985..210668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS01135 (U471_01830) glmS 200016..201818 (+) 1803 WP_011996223.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  U471_RS01140 (U471_01840) - 202463..203335 (+) 873 WP_011996224.1 ABC transporter ATP-binding protein -
  U471_RS01145 (U471_01850) - 203313..203966 (+) 654 WP_011996225.1 ABC-2 transporter permease -
  U471_RS01150 (U471_01860) - 204069..204467 (-) 399 Protein_186 hypothetical protein -
  U471_RS01155 (U471_01870) - 204607..204885 (+) 279 WP_023356676.1 hypothetical protein -
  U471_RS01160 (U471_01880) braR 204985..205668 (+) 684 WP_011996229.1 response regulator transcription factor Regulator
  U471_RS01165 (U471_01890) - 205665..206687 (+) 1023 WP_011996230.1 ATP-binding protein -
  U471_RS20280 - 206937..207125 (+) 189 WP_392753772.1 hypothetical protein -
  U471_RS01175 (U471_01900) - 207878..208642 (+) 765 WP_011996231.1 ABC transporter ATP-binding protein -
  U471_RS01180 (U471_01910) - 208629..210557 (+) 1929 WP_011996232.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26450.44 Da        Isoelectric Point: 4.8517

>NTDB_id=52292 U471_RS01160 WP_011996229.1 204985..205668(+) (braR) [Bacillus amyloliquefaciens CC178]
MDNIYKLLIIEDDKDMAKALQNLLVKWNFETVICGDFDNILSIYEKEEPHIILLDINIPSFDGFYWCKKIREVSSAPIIF
CSSRNSNMDIVMAINNGGDDYIQKPFDSHVLVAKLQAIIRRTYEYITAESHLIESNNVILNLNDAKIYFQDQSLELTKNE
FKILKTLMENKGKVVSRDNLMRQLWNDDIYVNENTLTVNINRLRNRLEGINVDDFILTKKGMGYIIQ

Nucleotide


Download         Length: 684 bp        

>NTDB_id=52292 U471_RS01160 WP_011996229.1 204985..205668(+) (braR) [Bacillus amyloliquefaciens CC178]
ATGGATAATATATATAAATTGCTGATTATAGAAGACGATAAGGATATGGCTAAGGCGTTACAAAATTTACTTGTTAAATG
GAATTTTGAGACCGTTATATGCGGAGATTTTGATAATATTTTGTCAATATATGAAAAAGAAGAGCCTCACATCATATTAT
TGGACATTAATATTCCTTCATTTGATGGTTTTTATTGGTGTAAGAAAATAAGAGAAGTTTCAAGTGCCCCAATTATTTTT
TGCTCTTCTAGAAACAGTAATATGGATATTGTCATGGCTATTAACAATGGCGGGGATGATTATATTCAAAAACCATTTGA
CAGCCATGTATTGGTGGCGAAATTACAAGCAATTATAAGAAGAACTTATGAGTACATAACAGCAGAATCTCATCTAATCG
AATCTAATAATGTGATATTAAACCTTAACGATGCAAAAATATATTTCCAAGACCAGAGTTTAGAGCTTACAAAGAATGAA
TTTAAAATTCTAAAAACGTTAATGGAAAACAAGGGAAAAGTTGTTTCACGGGATAATTTAATGAGACAGCTTTGGAATGA
TGATATTTACGTAAATGAAAATACGTTGACAGTAAATATAAATAGATTAAGGAATAGATTAGAGGGGATTAATGTTGATG
ACTTCATTTTAACAAAAAAAGGAATGGGATATATAATTCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0W1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.662

96.476

0.441

Multiple sequence alignment