Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JHL13_RS14065 Genome accession   NZ_CP066844
Coordinates   2926677..2927306 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Z30     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2921677..2932306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHL13_RS14050 (JHL13_13940) helD 2921919..2923973 (-) 2055 WP_022645482.1 DNA helicase IV -
  JHL13_RS14055 (JHL13_13945) yccF 2924096..2924542 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JHL13_RS14060 (JHL13_13950) yccS 2924552..2926714 (+) 2163 WP_141094226.1 YccS family putative transporter -
  JHL13_RS14065 (JHL13_13955) sxy/tfoX 2926677..2927306 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JHL13_RS14070 (JHL13_13960) sulA 2927525..2928034 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  JHL13_RS14075 (JHL13_13965) ompA 2928391..2929431 (+) 1041 WP_022645481.1 porin OmpA -
  JHL13_RS14080 (JHL13_13970) matP 2929508..2929960 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JHL13_RS14085 (JHL13_13975) ycbZ 2930146..2931906 (+) 1761 WP_000156473.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=522878 JHL13_RS14065 WP_000839153.1 2926677..2927306(-) (sxy/tfoX) [Escherichia coli strain Z30]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=522878 JHL13_RS14065 WP_000839153.1 2926677..2927306(-) (sxy/tfoX) [Escherichia coli strain Z30]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1