Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   U471_RS00330 Genome accession   NC_022653
Coordinates   61200..61430 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens CC178     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56200..66430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS00300 (U471_00520) ridA 56388..56768 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  U471_RS00305 (U471_00530) spoVG 56964..57257 (+) 294 WP_004264660.1 septation regulator SpoVG -
  U471_RS00310 (U471_00540) glmU 57449..58819 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  U471_RS00315 (U471_00550) - 58841..59794 (+) 954 WP_007409928.1 ribose-phosphate diphosphokinase -
  U471_RS00320 (U471_00560) - 59879..60487 (+) 609 WP_011996173.1 50S ribosomal protein L25/general stress protein Ctc -
  U471_RS00325 (U471_00570) pth 60572..61138 (+) 567 WP_011996174.1 aminoacyl-tRNA hydrolase -
  U471_RS00330 (U471_00580) subA/fin 61200..61430 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  U471_RS00335 (U471_00590) mfd 61500..65033 (+) 3534 WP_007409931.1 transcription-repair coupling factor -
  U471_RS00340 (U471_00600) spoVT 65170..65706 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=52287 U471_RS00330 WP_004264650.1 61200..61430(+) (subA/fin) [Bacillus amyloliquefaciens CC178]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=52287 U471_RS00330 WP_004264650.1 61200..61430(+) (subA/fin) [Bacillus amyloliquefaciens CC178]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAGCGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868