Detailed information NTG0522759

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K5T46_RS14890
• Genome accession: NZ_CP081489
• Coordinates: 3121795..3122787 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli BL21(DE3)
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3116795..3127787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5T46_RS14870 (K5T46_14870)	otnK	3117570..3118832 (+)	1263	WP_000590371.1	3-oxo-tetronate kinase	-
K5T46_RS14875 (K5T46_14875)	ygbL	3118829..3119467 (+)	639	WP_001278994.1	aldolase	-
K5T46_RS14880 (K5T46_14880)	ygbM	3119472..3120248 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
K5T46_RS14885 (K5T46_14885)	ygbN	3120337..3121701 (+)	1365	WP_000104459.1	GntP family transporter	-
K5T46_RS14890 (K5T46_14890)	rpoS	3121795..3122787 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K5T46_RS14895 (K5T46_14895)	nlpD	3122850..3123944 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
K5T46_RS14900 (K5T46_14900)	pcm	3124129..3124755 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
K5T46_RS14905 (K5T46_14905)	surE	3124749..3125510 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K5T46_RS14910 (K5T46_14910)	truD	3125491..3126540 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
K5T46_RS14915 (K5T46_14915)	ispF	3126537..3127016 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K5T46_RS14920 (K5T46_14920)	ispD	3127016..3127726 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=522759 K5T46_RS14890 WP_000081550.1 3121795..3122787(-) (rpoS) [Escherichia coli BL21(DE3)]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=522759 K5T46_RS14890 WP_000081550.1 3121795..3122787(-) (rpoS) [Escherichia coli BL21(DE3)]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715