Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JHD53_RS00485 Genome accession   NZ_CP066811
Coordinates   60747..62126 (+) Length   459 a.a.
NCBI ID   WP_118549462.1    Uniprot ID   -
Organism   Peptacetobacter hiranonis strain DGF055142     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55747..67126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHD53_RS00475 (JHD53_00475) bilS 58004..58504 (+) 501 WP_201416564.1 flavodoxin family protein BilS -
  JHD53_RS00480 (JHD53_00480) - 58702..60627 (+) 1926 WP_201416565.1 elongation factor G -
  JHD53_RS00485 (JHD53_00485) radA 60747..62126 (+) 1380 WP_118549462.1 DNA repair protein RadA Machinery gene
  JHD53_RS00490 (JHD53_00490) disA 62134..63204 (+) 1071 WP_201416566.1 DNA integrity scanning diadenylate cyclase DisA -
  JHD53_RS00495 (JHD53_00495) - 63378..64499 (+) 1122 WP_118549463.1 PIN/TRAM domain-containing protein -
  JHD53_RS00500 (JHD53_00500) - 64583..65404 (+) 822 WP_006440463.1 transketolase -
  JHD53_RS00505 (JHD53_00505) - 65404..66318 (+) 915 WP_118549464.1 transketolase family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50629.34 Da        Isoelectric Point: 8.0203

>NTDB_id=522723 JHD53_RS00485 WP_118549462.1 60747..62126(+) (radA) [Peptacetobacter hiranonis strain DGF055142]
MAKIKTKYVCQSCGYENPKWLGKCPECMKWNTFVEEIEDKSSKSNHRETFVIDKSSQKPVNINSITIKHEERFSSGINEL
NRVLGGGIVRGSLVLVGGDPGIGKSTLLLQVSESVAQSGKKVLYISGEESESQIKMRAERLNAKSENLYIMAENNLNIIE
HNLEGFDPDLIILDSIQTVFTPDIASAPGTVSQIKEGTSRFMRISKKMGISTFVVGHVTKEGSLAGPKIMEHMVDTVLYF
EGERYNTYRLIRAVKNRFGSTNELGVFEMSEKGLQELENPSKALISEKPENASGSVIVSTVEGTRPMLLELQALVSPTSF
GIPRRTATGIDFNRVNLLLAVLEKRAGMQIQNQDVYLNIVGGIKINEPSMDLGVILAVASGFRNIPISGEVAVTGEVGLT
GEIRGVSYIEKRISECRKLGFKKIIIPKSNYEAVKDVKGIEIWPVENVRQAINMVLRGE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=522723 JHD53_RS00485 WP_118549462.1 60747..62126(+) (radA) [Peptacetobacter hiranonis strain DGF055142]
ATGGCAAAAATAAAAACAAAATACGTATGTCAGTCATGTGGATACGAAAATCCAAAATGGCTTGGAAAATGTCCAGAATG
TATGAAGTGGAATACATTTGTGGAGGAAATAGAAGATAAAAGTTCAAAAAGTAATCATAGAGAAACTTTTGTAATAGATA
AATCATCACAGAAACCTGTAAACATAAACTCAATAACAATAAAACATGAAGAAAGATTCTCTAGTGGAATAAATGAGTTA
AACAGAGTATTAGGTGGTGGAATAGTTAGAGGGTCACTTGTACTTGTAGGTGGAGACCCTGGGATTGGTAAATCAACACT
ACTTTTACAAGTATCTGAAAGTGTTGCACAGTCAGGCAAGAAAGTGCTGTACATATCTGGAGAAGAATCAGAATCTCAGA
TAAAAATGAGAGCCGAAAGATTAAATGCGAAATCAGAAAATCTGTATATAATGGCAGAAAACAACTTAAACATAATAGAA
CATAACTTAGAAGGATTTGACCCAGATCTTATAATATTGGACTCAATTCAGACTGTATTTACACCGGATATAGCTTCGGC
ACCGGGTACAGTTAGCCAGATAAAAGAGGGTACTTCTAGATTTATGAGAATTTCTAAAAAAATGGGAATATCTACATTTG
TCGTTGGACATGTAACAAAAGAAGGATCTTTAGCAGGTCCAAAGATAATGGAGCACATGGTCGATACAGTACTTTACTTT
GAAGGGGAGAGATATAATACATACAGACTTATAAGAGCTGTAAAAAACAGATTTGGTTCTACAAATGAACTAGGTGTATT
TGAAATGAGTGAAAAAGGGCTACAAGAGCTTGAAAACCCATCAAAAGCGCTTATCTCAGAAAAACCAGAAAACGCATCTG
GATCAGTAATAGTATCGACTGTAGAGGGTACAAGACCGATGTTACTAGAGCTTCAGGCACTTGTATCGCCGACTAGCTTT
GGTATACCTAGAAGAACAGCTACAGGAATAGATTTTAATAGGGTAAATTTACTACTTGCGGTGCTTGAAAAAAGAGCTGG
AATGCAGATACAAAATCAAGACGTATACTTAAACATAGTAGGTGGAATAAAGATAAATGAGCCATCTATGGATTTAGGTG
TTATACTAGCAGTTGCATCTGGATTTAGAAACATACCGATAAGCGGAGAAGTTGCTGTTACTGGAGAAGTTGGACTTACT
GGAGAAATAAGGGGAGTAAGCTACATTGAAAAAAGAATATCTGAATGCAGAAAATTAGGCTTCAAAAAAATAATAATTCC
AAAATCTAATTATGAAGCTGTAAAAGATGTAAAAGGTATAGAAATATGGCCAGTTGAAAATGTAAGACAGGCTATAAATA
TGGTATTGAGGGGAGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(352-456)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.338

100

0.553
  radA Streptococcus mitis NCTC 12261

52.193

99.346

0.519
  radA Streptococcus pneumoniae Rx1

52.193

99.346

0.519
  radA Streptococcus pneumoniae D39

52.193

99.346

0.519
  radA Streptococcus pneumoniae R6

52.193

99.346

0.519
  radA Streptococcus pneumoniae TIGR4

52.193

99.346

0.519
  radA Streptococcus mitis SK321

51.974

99.346

0.516