Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JGY96_RS14565 Genome accession   NZ_CP066809
Coordinates   2831603..2832232 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella flexneri 3a strain 888048     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826603..2837232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY96_RS14550 (JGY96_14430) helD 2826845..2828899 (-) 2055 WP_000420536.1 DNA helicase IV -
  JGY96_RS14555 (JGY96_14435) - 2829022..2829468 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JGY96_RS14560 (JGY96_14440) yccS 2829478..2831640 (+) 2163 WP_000875052.1 YccS family putative transporter -
  JGY96_RS14565 (JGY96_14445) sxy/tfoX 2831603..2832232 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JGY96_RS14570 (JGY96_14450) sulA 2832451..2832960 (+) 510 WP_000288715.1 SOS-induced cell division inhibitor SulA -
  JGY96_RS14575 (JGY96_14455) ompA 2833316..2834362 (+) 1047 WP_005047463.1 porin OmpA -
  JGY96_RS14580 (JGY96_14460) matP 2834438..2834890 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JGY96_RS14585 (JGY96_14465) - 2835075..2836835 (+) 1761 WP_000156487.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=522713 JGY96_RS14565 WP_000839153.1 2831603..2832232(-) (sxy/tfoX) [Shigella flexneri 3a strain 888048]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=522713 JGY96_RS14565 WP_000839153.1 2831603..2832232(-) (sxy/tfoX) [Shigella flexneri 3a strain 888048]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAGCTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1