Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JGU77_RS09360 Genome accession   NZ_CP066806
Coordinates   1989571..1990200 (+) Length   209 a.a.
NCBI ID   WP_000839133.1    Uniprot ID   A0A1M2IUY6
Organism   Escherichia coli strain TCM3e1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1984571..1995200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGU77_RS09340 (JGU77_09340) ycbZ 1984959..1986719 (-) 1761 WP_000156477.1 Lon protease family protein -
  JGU77_RS09345 (JGU77_09345) matP 1986905..1987357 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JGU77_RS09350 (JGU77_09350) ompA 1987435..1988487 (-) 1053 WP_001346420.1 porin OmpA -
  JGU77_RS09355 (JGU77_09355) sulA 1988844..1989353 (-) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  JGU77_RS09360 (JGU77_09360) sxy/tfoX 1989571..1990200 (+) 630 WP_000839133.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JGU77_RS09365 (JGU77_09365) yccS 1990163..1992325 (-) 2163 WP_000875039.1 YccS family putative transporter -
  JGU77_RS09370 (JGU77_09370) yccF 1992335..1992781 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JGU77_RS09375 (JGU77_09375) helD 1992904..1994958 (+) 2055 WP_001361412.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=522688 JGU77_RS09360 WP_000839133.1 1989571..1990200(+) (sxy/tfoX) [Escherichia coli strain TCM3e1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTIDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=522688 JGU77_RS09360 WP_000839133.1 1989571..1990200(+) (sxy/tfoX) [Escherichia coli strain TCM3e1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCATTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M2IUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995