Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   K5A08_RS05575 Genome accession   NZ_CP081480
Coordinates   1084842..1085801 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   Q0P9A8
Organism   Campylobacter jejuni strain NCTC12658     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079842..1090801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A08_RS05550 (K5A08_05550) neuC 1080406..1081521 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  K5A08_RS08570 (K5A08_05555) - 1081518..1082456 (+) 939 Protein_1084 beta-1,4-N-acetylgalactosaminyltransferase -
  K5A08_RS08575 (K5A08_05560) - 1082466..1083128 (+) 663 WP_002881429.1 cytidylyltransferase domain-containing protein -
  K5A08_RS05565 (K5A08_05565) - 1083123..1083975 (-) 853 Protein_1086 glycosyltransferase -
  K5A08_RS05570 (K5A08_05570) waaV 1083959..1084783 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  K5A08_RS05575 (K5A08_05575) waaF 1084842..1085801 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  K5A08_RS05580 (K5A08_05580) gmhA 1085782..1086342 (-) 561 WP_002858021.1 D-sedoheptulose 7-phosphate isomerase -
  K5A08_RS05585 (K5A08_05585) rfaE1 1086339..1087724 (-) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  K5A08_RS05590 (K5A08_05590) rfaD 1087717..1088670 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  K5A08_RS05595 (K5A08_05595) gmhB 1088671..1089231 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  K5A08_RS05600 (K5A08_05600) - 1089313..1089615 (+) 303 WP_002852762.1 c-type cytochrome -
  K5A08_RS05605 (K5A08_05605) ccoS 1089638..1089844 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=522682 K5A08_RS05575 WP_002875425.1 1084842..1085801(+) (waaF) [Campylobacter jejuni strain NCTC12658]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=522682 K5A08_RS05575 WP_002875425.1 1084842..1085801(+) (waaF) [Campylobacter jejuni strain NCTC12658]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P9A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1