Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   K5A80_RS29920 Genome accession   NZ_CP081477
Coordinates   6279923..6280948 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain P8W     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6274923..6285948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A80_RS29895 (K5A80_30640) - 6275111..6275428 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  K5A80_RS29900 (K5A80_30645) trkA 6275577..6276950 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  K5A80_RS29905 (K5A80_30650) rsmB 6276978..6278282 (-) 1305 WP_058020100.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  K5A80_RS29910 (K5A80_30655) fmt 6278279..6279223 (-) 945 WP_010793609.1 methionyl-tRNA formyltransferase -
  K5A80_RS29915 (K5A80_30660) def 6279278..6279784 (-) 507 WP_003107059.1 peptide deformylase -
  K5A80_RS29920 (K5A80_30665) tsaP 6279923..6280948 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  K5A80_RS29925 (K5A80_30670) dprA 6281083..6282171 (+) 1089 WP_003118479.1 DNA-processing protein DprA Machinery gene
  K5A80_RS29930 (K5A80_30675) - 6282212..6282769 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  K5A80_RS29935 (K5A80_30680) - 6282779..6283756 (-) 978 WP_023911199.1 quinone oxidoreductase -
  K5A80_RS29940 (K5A80_30685) hemF 6283947..6284864 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  K5A80_RS29945 (K5A80_30690) aroE 6284922..6285746 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=522646 K5A80_RS29920 WP_003097294.1 6279923..6280948(+) (tsaP) [Pseudomonas aeruginosa strain P8W]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=522646 K5A80_RS29920 WP_003097294.1 6279923..6280948(+) (tsaP) [Pseudomonas aeruginosa strain P8W]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATTGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393