Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GIY62_RS04010 Genome accession   NZ_CP066798
Coordinates   865139..866515 (-) Length   458 a.a.
NCBI ID   WP_042625373.1    Uniprot ID   A0A0B6RNT3
Organism   Burkholderia plantarii strain KACC 18964     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 860139..871515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIY62_RS03990 (GIY62_03965) cls 860374..861813 (+) 1440 WP_304991746.1 cardiolipin synthase -
  GIY62_RS03995 (GIY62_03970) - 861850..862329 (-) 480 WP_055138932.1 glutathione peroxidase -
  GIY62_RS04000 (GIY62_03975) - 862559..864493 (+) 1935 WP_055138933.1 ATP-binding cassette domain-containing protein -
  GIY62_RS04005 (GIY62_03980) - 864739..865002 (-) 264 WP_042625372.1 DUF2866 domain-containing protein -
  GIY62_RS04010 (GIY62_03985) radA 865139..866515 (-) 1377 WP_042625373.1 DNA repair protein RadA Machinery gene
  GIY62_RS04015 (GIY62_03990) alr 866526..867596 (-) 1071 WP_042625374.1 alanine racemase -
  GIY62_RS04020 (GIY62_03995) lplT 867809..869116 (+) 1308 WP_042625375.1 lysophospholipid transporter LplT -
  GIY62_RS04025 (GIY62_04000) thiD 869262..870071 (+) 810 WP_042625376.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GIY62_RS04030 (GIY62_04005) - 870314..871276 (-) 963 WP_304991747.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48625.93 Da        Isoelectric Point: 6.8194

>NTDB_id=522613 GIY62_RS04010 WP_042625373.1 865139..866515(-) (radA) [Burkholderia plantarii strain KACC 18964]
MAKQKTVYVCTECGGQSPKWQGQCPSCHAWNTLVESAAETPSTHRFQALAKSAPVQRLADIDAADVPRFTTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASERRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQ
ATIDAERPDVAVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLVVFGEVGLA
GEIRPSPRGQERLREAAKLGFTTALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=522613 GIY62_RS04010 WP_042625373.1 865139..866515(-) (radA) [Burkholderia plantarii strain KACC 18964]
GTGGCAAAACAGAAAACGGTTTACGTCTGTACCGAATGCGGCGGCCAGTCGCCGAAATGGCAGGGCCAGTGCCCGTCCTG
CCATGCCTGGAACACGCTGGTCGAATCGGCCGCCGAAACACCGTCCACGCACCGCTTCCAGGCGCTCGCCAAGAGCGCGC
CGGTGCAGCGCCTGGCCGACATCGACGCGGCCGACGTGCCGCGCTTCACGACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGTC
GCTCGCGCAGCTCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCGCAGATCGCGCTGCGCGCGC
AGCGGCTCGCGCTGCTCGACCACGGCGGCGACGCGGCCGACCTCAAGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAG
GCCACGATCGACGCGGAGCGCCCCGACGTGGCCGTGATCGATTCGATCCAGACGGTCTATTCGGATGCGCTGTCGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCCAAGCAGTCGGGTACCGCGATCATCA
TGGTCGGCCACGTCACGAAGGAGGGCGCGCTGGCCGGTCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTCTACTTC
GAGGGCGACACGCATTCGTCGTACCGGCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAACGCGGGCTCCGCGGCGTGGCGAACCCGTCGGCGCTGTTCCTCTCGCAGCACGAGGAGGTGGTGCCGG
GCTCCTGCGTGCTGGTCACGCAGGAGGGCTCGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTCGTCGACACCGCCAACGTG
CCGAATCCGCGCCGCCTCGCGGTGGGGCTCGAGCAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGCGGG
CATCGCCTGCTTCGACCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTCAAGATCACCGAGCCGGCGGCCGATCTGGCCG
TGCTGCTGGCGATCCATTCGTCGATGCGTAACAAAGCGTTGCCGAAGGGCCTGGTCGTGTTCGGCGAAGTCGGGCTGGCC
GGCGAGATCCGGCCGTCGCCGCGCGGCCAGGAGCGCCTGCGCGAGGCCGCCAAGCTGGGCTTCACGACGGCCCTGATTCC
CAAGGCCAATGCGCCCAAGCAGCCGATCGAGGGGCTCACCGTGATGGCCGTGGAGCGCATCGAGCAGGCCATCGACCGCG
TGCGCGGCCTTGAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(363-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6RNT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.489
  radA Streptococcus mitis SK321

47.162

100

0.472
  radA Streptococcus pneumoniae Rx1

46.855

100

0.472
  radA Streptococcus pneumoniae D39

46.855

100

0.472
  radA Streptococcus pneumoniae R6

46.855

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.855

100

0.472
  radA Streptococcus mitis NCTC 12261

46.827

99.782

0.467