Detailed information NTG0522600

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K5A80_RS18550
• Genome accession: NZ_CP081477
• Coordinates: 3888724..3889728 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain P8W
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3883724..3894728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5A80_RS18535 (K5A80_19320)	-	3884207..3885214 (+)	1008	WP_003098486.1	TolB family protein	-
K5A80_RS18540 (K5A80_19325)	mutS	3885340..3887907 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
K5A80_RS18545 (K5A80_19330)	fdxA	3887974..3888297 (+)	324	WP_003119354.1	ferredoxin FdxA	-
K5A80_RS18550 (K5A80_19335)	rpoS	3888724..3889728 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
K5A80_RS18555 (K5A80_19340)	-	3889833..3890726 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
K5A80_RS18560 (K5A80_19345)	-	3890772..3891408 (-)	637	Protein_3677	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K5A80_RS18565 (K5A80_19350)	surE	3891441..3892190 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
K5A80_RS18570 (K5A80_19355)	truD	3892178..3893245 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
K5A80_RS18575 (K5A80_19360)	ispF	3893242..3893715 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K5A80_RS18580 (K5A80_19365)	fghA	3893786..3894637 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=522600 K5A80_RS18550 WP_003113871.1 3888724..3889728(-) (rpoS) [Pseudomonas aeruginosa strain P8W]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=522600 K5A80_RS18550 WP_003113871.1 3888724..3889728(-) (rpoS) [Pseudomonas aeruginosa strain P8W]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653