Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   K5A80_RS15855 Genome accession   NZ_CP081477
Coordinates   3333440..3333769 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain P8W     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3328440..3338769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5A80_RS15840 (K5A80_16290) uvrB 3329827..3331839 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  K5A80_RS15845 (K5A80_16295) - 3332027..3333223 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  K5A80_RS15855 (K5A80_16305) comEA/comE1 3333440..3333769 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  K5A80_RS15860 (K5A80_16310) - 3333960..3335957 (-) 1998 WP_003119734.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  K5A80_RS15865 (K5A80_16315) - 3336522..3337629 (-) 1108 Protein_3139 IS3 family transposase -
  K5A80_RS15870 (K5A80_16320) - 3337707..3338726 (-) 1020 WP_003113413.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=522595 K5A80_RS15855 WP_003104586.1 3333440..3333769(-) (comEA/comE1) [Pseudomonas aeruginosa strain P8W]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=522595 K5A80_RS15855 WP_003104586.1 3333440..3333769(-) (comEA/comE1) [Pseudomonas aeruginosa strain P8W]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385