Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JC200_RS10100 Genome accession   NZ_CP066784
Coordinates   2120810..2122171 (-) Length   453 a.a.
NCBI ID   WP_274436130.1    Uniprot ID   -
Organism   Alicyclobacillus sp. ALC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2115810..2127171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC200_RS10075 (JC200_10060) ispF 2116156..2116644 (-) 489 WP_274436125.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JC200_RS10080 (JC200_10065) - 2116644..2117351 (-) 708 WP_274436126.1 IspD/TarI family cytidylyltransferase -
  JC200_RS10085 (JC200_10070) - 2117499..2118605 (-) 1107 WP_274436127.1 PIN/TRAM domain-containing protein -
  JC200_RS10090 (JC200_10075) pssA 2118927..2119661 (-) 735 WP_274436128.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  JC200_RS10095 (JC200_10080) disA 2119720..2120799 (-) 1080 WP_274436129.1 DNA integrity scanning diadenylate cyclase DisA -
  JC200_RS10100 (JC200_10085) radA 2120810..2122171 (-) 1362 WP_274436130.1 DNA repair protein RadA Machinery gene
  JC200_RS10105 (JC200_10090) - 2122352..2124787 (-) 2436 WP_274436131.1 ATP-dependent Clp protease ATP-binding subunit -
  JC200_RS10110 (JC200_10095) - 2124790..2125866 (-) 1077 WP_274436132.1 protein arginine kinase -
  JC200_RS10115 (JC200_10100) - 2125880..2126392 (-) 513 WP_274436133.1 UvrB/UvrC motif-containing protein -
  JC200_RS10120 (JC200_10105) - 2126446..2126928 (-) 483 WP_274436134.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48566.65 Da        Isoelectric Point: 7.3823

>NTDB_id=522528 JC200_RS10100 WP_274436130.1 2120810..2122171(-) (radA) [Alicyclobacillus sp. ALC3]
MPKSNTQYVCQSCGHVSAKWAGRCGGCGEWNTYVEELRPSAKVASLPSGLANAAVPRRIPDIPSQLETRVATGFPECDRV
LGGGVVPGSLVLVGGDPGIGKSTLLLQLSHTMAGRGHTVLYVSGEESANQLKLRAERIEATNENLLVLAETDLDVTVRAV
EQVRPGFLVIDSIQTMYRSGLTSAPGSVAQVRECTSLLLRVAKQFNIATFIVGHVTKDGSLAGPRLLEHMVDAVLYFEGE
RHQAFRVLRAVKNRFGSTNELAIFEMKNEGLQEVVNPSEMFLSERALQSPGSAVVAALEGSRPLLLEVQALVASSSFGTP
RRMSTGADHNRVSLVMAVLEKRLGLQLQSSDAYVNVAGGMRVDEPAIDLGVALAVASSFRDRPLAAGDVYIGEVGLTGEV
RSVSRLEQRIREAEKLGFARCLVPTHSLGGWKYNGRIEVKGVASIQEALQLAL

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=522528 JC200_RS10100 WP_274436130.1 2120810..2122171(-) (radA) [Alicyclobacillus sp. ALC3]
GTGCCAAAGTCAAACACGCAGTATGTTTGTCAGTCGTGCGGACATGTGTCAGCCAAATGGGCAGGCCGGTGCGGCGGCTG
TGGCGAATGGAACACATATGTGGAAGAACTGCGACCCTCTGCAAAGGTTGCGTCGTTGCCAAGTGGCCTCGCGAATGCAG
CTGTCCCACGCCGCATTCCGGATATCCCTTCACAGTTGGAGACGCGCGTTGCAACCGGCTTCCCGGAGTGCGACCGGGTA
CTTGGTGGTGGCGTTGTCCCCGGCTCGCTGGTGTTGGTAGGCGGCGACCCTGGCATTGGGAAGTCGACATTGTTACTGCA
ATTGTCGCATACAATGGCAGGGCGGGGTCACACAGTTTTGTACGTATCCGGCGAGGAGTCTGCTAATCAACTGAAACTGC
GGGCAGAACGCATCGAAGCGACGAACGAGAACCTATTGGTACTCGCGGAGACCGACCTCGATGTCACTGTGCGAGCGGTG
GAGCAGGTCCGCCCTGGTTTTCTCGTGATTGACTCAATCCAGACGATGTACCGCTCAGGACTAACCTCCGCGCCAGGCAG
CGTAGCGCAGGTTCGCGAGTGCACGAGTCTGCTCCTGCGCGTCGCGAAGCAGTTTAACATTGCTACCTTTATCGTCGGGC
ACGTCACGAAGGACGGCAGTTTGGCGGGACCTCGCTTGCTTGAACACATGGTTGACGCAGTACTATACTTTGAAGGAGAA
CGTCACCAAGCCTTTCGGGTCTTGCGGGCGGTAAAGAACCGCTTCGGGTCCACAAATGAGTTGGCGATCTTTGAGATGAA
GAACGAGGGGCTGCAGGAAGTTGTGAACCCGTCAGAGATGTTTCTGTCGGAACGAGCCTTGCAGTCACCCGGATCGGCTG
TCGTTGCAGCGCTCGAAGGATCTCGACCGCTCTTGCTCGAGGTGCAGGCGCTTGTCGCGTCATCGAGTTTCGGCACACCG
CGTCGGATGAGTACGGGTGCAGACCACAACCGCGTCAGTCTGGTGATGGCGGTGCTCGAAAAGCGACTCGGCCTCCAGCT
GCAGTCGTCAGATGCTTATGTCAATGTCGCCGGGGGTATGCGGGTCGATGAACCCGCGATTGATCTCGGTGTCGCCCTCG
CGGTGGCTTCCAGTTTTCGCGACCGACCGCTGGCAGCGGGAGACGTATACATTGGAGAAGTTGGACTGACTGGCGAGGTT
CGGTCGGTGTCGCGCCTGGAGCAGCGAATCCGAGAAGCTGAGAAGCTCGGGTTTGCGCGCTGCTTGGTGCCAACACACAG
CCTTGGCGGTTGGAAGTACAATGGGCGGATTGAGGTAAAGGGCGTGGCTTCGATTCAAGAAGCGCTTCAGTTGGCCTTGT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(337-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

59.43

100

0.598
  radA Streptococcus pneumoniae Rx1

55.111

99.338

0.547
  radA Streptococcus pneumoniae D39

55.111

99.338

0.547
  radA Streptococcus pneumoniae R6

55.111

99.338

0.547
  radA Streptococcus pneumoniae TIGR4

55.111

99.338

0.547
  radA Streptococcus mitis NCTC 12261

55.111

99.338

0.547
  radA Streptococcus mitis SK321

55.111

99.338

0.547