Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   JDW18_RS18260 Genome accession   NZ_CP066783
Coordinates   3950237..3950641 (-) Length   134 a.a.
NCBI ID   WP_218240991.1    Uniprot ID   -
Organism   Comamonas fluminis strain CJ34     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3945237..3955641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDW18_RS18245 - 3947069..3949312 (-) 2244 WP_218240987.1 methyl-accepting chemotaxis protein -
  JDW18_RS18250 - 3949332..3949859 (-) 528 WP_218240988.1 chemotaxis protein CheW -
  JDW18_RS18255 - 3949875..3950237 (-) 363 WP_218240989.1 response regulator -
  JDW18_RS18260 pilG 3950237..3950641 (-) 405 WP_218240991.1 response regulator Regulator
  JDW18_RS18265 - 3950696..3950848 (-) 153 WP_158385719.1 rubredoxin -
  JDW18_RS18270 - 3950964..3951941 (+) 978 WP_218240993.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JDW18_RS18275 hemL 3951925..3953229 (+) 1305 WP_218240995.1 glutamate-1-semialdehyde 2,1-aminomutase -
  JDW18_RS18280 - 3953411..3954049 (-) 639 WP_218240996.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14727.95 Da        Isoelectric Point: 7.6686

>NTDB_id=522515 JDW18_RS18260 WP_218240991.1 3950237..3950641(-) (pilG) [Comamonas fluminis strain CJ34]
MTASSVPLRVLVVDDSNTIRRSAEIFLKQGGYEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFS
NTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVEQFGKQSAGVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=522515 JDW18_RS18260 WP_218240991.1 3950237..3950641(-) (pilG) [Comamonas fluminis strain CJ34]
GTGACAGCATCCAGCGTGCCCCTGCGGGTTTTGGTGGTGGATGACAGCAACACCATTCGTCGCAGCGCGGAAATTTTCCT
CAAGCAAGGCGGCTATGAAGTGCTGCTGGCCGACGATGGCTTTGATGCGCTCTCCAAGGTCAACGATTACCAGCCCCAGC
TGATCTTTTGCGACATTCTGATGCCCAAGCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCCCGCTTTTCC
AATACACCTGTCGTGATGCTGTCATCCAAGGATGGCGTATTCGACAAGGCACGCGGCCGCATGGTGGGCTGCCAAGACTA
TCTGACCAAACCGTTTACAAAAGATCAACTGCTGCAGGCCGTGGAACAGTTCGGCAAGCAGTCCGCAGGTGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

59.649

85.075

0.507