Detailed information NTG0522514

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: JDW18_RS17830
• Genome accession: NZ_CP066783
• Coordinates: 3856903..3858066 (+)
• Length: 387 a.a.
• NCBI ID: WP_218240856.1
• Uniprot ID: -
• Organism: Comamonas fluminis strain CJ34
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3851903..3863066

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JDW18_RS17810	coaD	3852679..3853173 (-)	495	WP_218240849.1	pantetheine-phosphate adenylyltransferase	-
JDW18_RS17815	rsmD	3853337..3854041 (-)	705	WP_218240852.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
JDW18_RS17820	-	3854038..3855390 (-)	1353	WP_218240854.1	pitrilysin family protein	-
JDW18_RS17825	-	3855408..3856838 (-)	1431	WP_218243972.1	pitrilysin family protein	-
JDW18_RS17830	pilA	3856903..3858066 (+)	1164	WP_218240856.1	signal recognition particle-docking protein FtsY	Machinery gene
JDW18_RS17835	cutA	3858183..3858530 (-)	348	WP_218240857.1	divalent-cation tolerance protein CutA	-
JDW18_RS17840	-	3858863..3859867 (-)	1005	WP_218240858.1	2-dehydropantoate 2-reductase	-
JDW18_RS17845	-	3859869..3860615 (-)	747	WP_218240859.1	class II aldolase/adducin family protein	-
JDW18_RS17850	-	3860682..3861212 (-)	531	WP_218240860.1	MarR family winged helix-turn-helix transcriptional regulator	-
JDW18_RS17855	-	3861725..3861937 (+)	213	WP_218240861.1	hypothetical protein	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 41005.69 Da
• Isoelectric Point: 5.5143

>NTDB_id=522514 JDW18_RS17830 WP_218240856.1 3856903..3858066(+) (pilA) [Comamonas fluminis strain CJ34]
MFSFFKKKPNPPDVVDTTPAAETAAEPAAAQPKPAPQDTPTAPAESGGSSWWLKPFGGASAAKHTESEPVTQDFVAAPEP
TAKPQAENARQSWMERLKTGLRKTGSSIATVFTGTQINDALYEELEEALLMADTGVKATQHLLDDLKRRVKETKTTEPAA
VKALLADALADLLKPLEKPLTIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLAESDQTVLLAAADTFRAAAREQLGVWANR
NTVEIVSQEGGDPAAVSFDAVSAGKARKKDVVLVDTAGRLPTQLHLMEELKKIKRVVNKADGTAPHEVLLVIDGNTGQNA
LAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKIEDLETFSAKEFAQALLS

Nucleotide

• Length: 1164 bp

>NTDB_id=522514 JDW18_RS17830 WP_218240856.1 3856903..3858066(+) (pilA) [Comamonas fluminis strain CJ34]
ATGTTCAGTTTTTTCAAGAAAAAGCCCAATCCACCCGATGTGGTGGACACCACGCCCGCAGCAGAGACAGCTGCGGAACC
TGCTGCTGCTCAGCCCAAGCCAGCTCCACAGGATACGCCCACCGCGCCCGCCGAAAGTGGCGGCAGCTCCTGGTGGCTCA
AGCCTTTTGGGGGCGCTTCGGCTGCCAAGCATACCGAAAGCGAGCCAGTCACTCAGGATTTTGTAGCAGCGCCCGAGCCC
ACCGCAAAGCCGCAGGCCGAAAATGCCCGCCAAAGCTGGATGGAGCGCCTCAAGACCGGGCTGCGCAAGACCGGCTCCAG
CATTGCCACCGTCTTTACCGGCACGCAGATCAATGACGCGCTGTACGAGGAGCTGGAAGAAGCCCTGCTGATGGCAGATA
CCGGCGTCAAGGCCACCCAGCACCTGCTCGATGACCTCAAGCGCCGCGTCAAAGAAACCAAGACCACCGAGCCTGCCGCC
GTCAAGGCGCTGCTGGCCGATGCGCTGGCTGATCTGCTCAAACCGCTGGAAAAGCCGCTGACGATTGGCGAGCACACGCC
CACCGTCATCATGGTGGCGGGCGTCAACGGCGCGGGCAAGACCACGTCGATTGGCAAGCTGACCAAGCACCTGGCCGAAA
GCGATCAAACCGTGCTGCTGGCCGCTGCCGACACCTTCCGCGCTGCTGCGCGGGAGCAACTGGGCGTATGGGCCAACCGC
AATACGGTGGAAATCGTCAGCCAGGAAGGGGGCGACCCTGCGGCTGTGAGCTTTGATGCGGTCAGCGCAGGCAAGGCCCG
CAAAAAAGATGTGGTGCTGGTGGATACCGCTGGTCGTCTGCCCACCCAGCTGCACCTGATGGAAGAGTTGAAGAAGATCA
AGCGCGTGGTCAACAAGGCCGATGGCACGGCGCCGCACGAGGTGCTGCTGGTCATTGACGGCAATACCGGCCAGAACGCA
CTGGCCCAGGTACGCGCTTTTGATGATGCGCTGCAGCTGACCGGCCTGATCGTGACCAAGCTGGACGGCACGGCCAAGGG
CGGCGTGCTGGCCGCGATTGCGCAGGAGCGCCCCATTCCCGTGTACTTCATCGGTGTGGGCGAGAAGATTGAAGATCTGG
AAACCTTCAGCGCCAAGGAATTTGCCCAGGCGCTGCTGTCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (187-386)

• SRP54-type protein, helical bundle domain (SRP54_N) (106-169)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.752	95.866	0.496