Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JDW18_RS00795 Genome accession   NZ_CP066783
Coordinates   115492..116877 (-) Length   461 a.a.
NCBI ID   WP_218241893.1    Uniprot ID   -
Organism   Comamonas fluminis strain CJ34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110492..121877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDW18_RS00770 - 111386..112336 (+) 951 WP_218241888.1 hypothetical protein -
  JDW18_RS00775 - 112329..113564 (-) 1236 WP_218241889.1 O-antigen ligase family protein -
  JDW18_RS00780 - 113574..114317 (-) 744 WP_218241890.1 glycosyltransferase family 25 protein -
  JDW18_RS00785 - 114538..114747 (-) 210 WP_218241891.1 zinc-finger domain-containing protein -
  JDW18_RS00790 - 114855..115316 (-) 462 WP_218241892.1 glycerate kinase -
  JDW18_RS00795 radA 115492..116877 (-) 1386 WP_218241893.1 DNA repair protein RadA Machinery gene
  JDW18_RS00805 - 117333..118616 (-) 1284 WP_218241894.1 Glu/Leu/Phe/Val dehydrogenase -
  JDW18_RS00810 - 118827..119747 (+) 921 WP_218241895.1 fumarylacetoacetate hydrolase family protein -
  JDW18_RS00815 - 119957..120460 (+) 504 WP_246610193.1 nuclear transport factor 2 family protein -
  JDW18_RS00820 - 120479..121378 (-) 900 WP_218243729.1 PPK2 family polyphosphate kinase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48069.42 Da        Isoelectric Point: 7.6668

>NTDB_id=522504 JDW18_RS00795 WP_218241893.1 115492..116877(-) (radA) [Comamonas fluminis strain CJ34]
MAKDKTTFTCNACGGTSPRWLGKCPSCGAWNTLVETVAESASGGKNRLSQPQGYAGLANAQAVTPLSAIEAQDVARTPSG
IEELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALHRISLPTLYVTGEESGAQVALRSRRLGLDNSQVNVLAEIQL
EKILATVEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITIILVGHVTKDGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAARRLSVGLDKDRLAMLLAVLNRHAGVACADQDVFVNAVGGVRINEPAADLAVMLAITSSLRGKALPKGFIAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTIAIVPKANAPKKAIAGLTIHAVERVDEAMNIVRGIG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=522504 JDW18_RS00795 WP_218241893.1 115492..116877(-) (radA) [Comamonas fluminis strain CJ34]
ATGGCCAAAGACAAAACCACCTTTACCTGCAATGCCTGCGGCGGCACCAGCCCGCGCTGGTTGGGCAAATGCCCCAGCTG
TGGCGCCTGGAACACTTTGGTCGAGACAGTGGCCGAATCCGCTTCGGGTGGCAAGAACCGCCTGAGCCAGCCTCAGGGTT
ACGCGGGCCTGGCCAATGCCCAGGCCGTGACGCCACTGTCCGCCATCGAGGCCCAGGACGTAGCCCGCACACCCAGCGGT
ATTGAGGAGCTGGACCGCGTGCTGGGCGGCGGAGTGGTCGAAGGCGGCGTGGTCTTGATCGGCGGAGACCCCGGTATAGG
TAAGTCCACACTCCTTCTGCAAGCCATGGATGCGCTGCATCGCATCAGCCTGCCTACGCTGTATGTGACGGGCGAGGAAA
GCGGTGCCCAGGTGGCGCTGCGATCGCGCCGACTGGGGCTGGATAACAGCCAGGTCAATGTGCTGGCCGAGATTCAGCTG
GAAAAAATCCTGGCCACCGTAGAGGCTACTCAACCTGCCGTGGTGGTGATCGACTCGATCCAGACCGTGTATTCGGACCA
ACTCTCCTCGGCTCCGGGCTCCGTGGCCCAGGTGCGCGAATGCGCGGCCCATCTGACACGGGCGGCCAAGACCACAGGCA
TCACCATCATTCTGGTGGGCCACGTGACCAAGGACGGCGCGCTGGCCGGCCCGCGCGTGCTGGAGCATATGGTGGACACG
GTGCTGTACTTCGAGGGCGATACGCACAGCAACTTCCGCCTGGTGCGCGCCATCAAGAACCGTTTTGGCGCCGTGAACGA
AATCGGCGTATTCGCCATGACGGAGAAAGGCCTCAAAGGCGTGACCAACCCCAGCGCCATCTTTCTGAGCCAGCACAGCG
AGCCTGTGCCCGGCAGCTGCGTGCTGGTGACGCTGGAAGGCACACGCCCCATGCTGGTGGAGATTCAGGCACTGGTGGAC
CAGGGTGGCCCTGCCGCACGGCGCCTGTCTGTGGGCTTAGACAAAGACCGCTTGGCCATGCTGCTGGCTGTGCTCAACCG
CCACGCGGGCGTGGCCTGCGCCGATCAAGATGTATTCGTCAACGCCGTGGGCGGTGTACGCATCAATGAGCCAGCAGCCG
ACCTGGCCGTGATGTTAGCAATTACTTCCAGCCTGAGAGGCAAGGCCTTGCCCAAGGGCTTTATCGCCTTCGGCGAAGTT
GGTCTGGCCGGAGAAGTGCGCCCCGCCCCCCGCGGCCAGGAGCGGCTAAAGGAAGCTGCAAAGTTAGGATTCACTATCGC
CATCGTTCCCAAGGCCAACGCACCCAAGAAGGCGATTGCAGGCCTGACCATCCATGCCGTAGAGCGTGTGGATGAGGCCA
TGAACATCGTGCGAGGCATCGGCTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(364-455)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.918

100

0.49
  radA Streptococcus mitis NCTC 12261

47.289

100

0.473
  radA Streptococcus mitis SK321

48.222

97.614

0.471
  radA Streptococcus pneumoniae TIGR4

48.115

97.831

0.471
  radA Streptococcus pneumoniae R6

48.115

97.831

0.471
  radA Streptococcus pneumoniae Rx1

48.115

97.831

0.471
  radA Streptococcus pneumoniae D39

48.115

97.831

0.471