Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   K4756_RS09585 Genome accession   NZ_CP081458
Coordinates   1889534..1890151 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis subsp. subtilis strain ps4060     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1884534..1895151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4756_RS09555 (K4756_09505) yndJ 1884856..1886496 (+) 1641 WP_015383759.1 YndJ family protein -
  K4756_RS09560 (K4756_09510) - 1886583..1886897 (+) 315 WP_174616646.1 hypothetical protein -
  K4756_RS09565 (K4756_09515) pghL 1887122..1887880 (+) 759 WP_015383761.1 gamma-polyglutamate hydrolase PghL -
  K4756_RS09570 (K4756_09520) - 1887907..1888356 (-) 450 WP_015483284.1 YndM family protein -
  K4756_RS09575 (K4756_09525) fosB 1888562..1888996 (+) 435 WP_015383763.1 metallothiol transferase FosB -
  K4756_RS09580 - 1888905..1889162 (+) 258 Protein_1836 hypothetical protein -
  K4756_RS09585 (K4756_09530) dinR/lexA 1889534..1890151 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  K4756_RS09590 (K4756_09535) yneA 1890301..1890618 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  K4756_RS09595 (K4756_09540) dinL 1890637..1891290 (+) 654 WP_015383764.1 recombinase family protein -
  K4756_RS09600 (K4756_09545) ynzC 1891354..1891587 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  K4756_RS09605 (K4756_09550) recP/tkt 1891756..1893759 (+) 2004 WP_015483285.1 transketolase Machinery gene
  K4756_RS09610 (K4756_09555) sirA 1893912..1894358 (+) 447 WP_015383766.1 sporulation inhibitor of replication protein SirA -
  K4756_RS09615 (K4756_09560) yneF 1894444..1894662 (+) 219 WP_003221221.1 YneF family protein -
  K4756_RS09620 (K4756_09565) ynzD 1894736..1894909 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=522486 K4756_RS09585 WP_003238209.1 1889534..1890151(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain ps4060]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=522486 K4756_RS09585 WP_003238209.1 1889534..1890151(-) (dinR/lexA) [Bacillus subtilis subsp. subtilis strain ps4060]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTTAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GACTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCCGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1