Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GO620_RS15785 Genome accession   NZ_CP066775
Coordinates   3407393..3408856 (+) Length   487 a.a.
NCBI ID   WP_157524722.1    Uniprot ID   A0A6I4HYE6
Organism   Mucilaginibacter ginkgonis strain HMF7856     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3402393..3413856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO620_RS15760 (GO620_015760) - 3402673..3403068 (-) 396 WP_157524717.1 single-stranded DNA-binding protein -
  GO620_RS15765 (GO620_015765) mutY 3403081..3404145 (-) 1065 WP_157524718.1 A/G-specific adenine glycosylase -
  GO620_RS15770 (GO620_015770) - 3404306..3404602 (+) 297 WP_157524719.1 HU family DNA-binding protein -
  GO620_RS15775 (GO620_015775) - 3404611..3405471 (+) 861 WP_157524720.1 tetratricopeptide repeat protein -
  GO620_RS15780 (GO620_015780) - 3405686..3407236 (+) 1551 WP_157524721.1 Rne/Rng family ribonuclease -
  GO620_RS15785 (GO620_015785) radA 3407393..3408856 (+) 1464 WP_157524722.1 DNA repair protein RadA Machinery gene
  GO620_RS15790 (GO620_015790) - 3408860..3410227 (-) 1368 WP_157524723.1 hypothetical protein -
  GO620_RS15795 (GO620_015795) - 3410458..3410862 (-) 405 WP_157524724.1 RNA-binding protein -
  GO620_RS15800 (GO620_015800) - 3410994..3411494 (-) 501 WP_157524725.1 hypothetical protein -
  GO620_RS15805 (GO620_015805) - 3411495..3412667 (-) 1173 WP_157524726.1 class I SAM-dependent RNA methyltransferase -
  GO620_RS15810 (GO620_015810) - 3412743..3413108 (+) 366 WP_157524727.1 DUF3127 domain-containing protein -

Sequence

Protein


Download         Length: 487 a.a.        Molecular weight: 52930.62 Da        Isoelectric Point: 5.5526

>NTDB_id=522481 GO620_RS15785 WP_157524722.1 3407393..3408856(+) (radA) [Mucilaginibacter ginkgonis strain HMF7856]
MAKTKTTYFCQSCGYETPKWLGKCPACQQWNTFVEEVIEKPNSSVPDWKATNSTSQQRSNKAVAVGDIAVQDEHRFATPD
QEFNRVLGGGIVAGSLVLIGGEPGIGKSTLMLQLAMNMPGLKVLYVSGEESEKQIKMRAERLNATPQPPEGGVEFGSGNA
VPPSGGGGGCYILTETSTQNIFKQIEQTEPDLVVIDSIQTLYSSHIESTPGSVSQVRECTAELLRFAKESGTPVILIGHI
TKDGMIAGPKILEHMVDTVLQFEGDRHHVYRILRCIKNRFGSASELGIYEMLGVGLREVSNPSEILLSQRDEALSGITIS
ATLEGMRPMLIETQALVSTSPYGTPQRSATGFDTRRMNMLLAVLEKKCGFKLGAKDVFLNITGGIKVEDPAIDLGLAAAI
ISSHEDIAVPSKTCFAGELGLSGEIRAVNRVEQRIAEAQKLGFEKIFISKYNLPSTKQDKQRIDLSRYTIEIIPVAGIDE
VFNLLFG

Nucleotide


Download         Length: 1464 bp        

>NTDB_id=522481 GO620_RS15785 WP_157524722.1 3407393..3408856(+) (radA) [Mucilaginibacter ginkgonis strain HMF7856]
ATGGCCAAAACTAAAACAACTTACTTCTGTCAGAGCTGCGGCTACGAAACACCGAAGTGGCTGGGCAAATGCCCTGCATG
CCAGCAGTGGAACACTTTTGTAGAAGAAGTTATTGAAAAGCCAAACTCATCTGTGCCCGATTGGAAAGCCACCAATTCGA
CGTCTCAGCAACGGTCTAACAAAGCGGTCGCGGTTGGCGATATAGCTGTACAAGATGAGCACCGTTTTGCCACACCCGAT
CAGGAATTTAACCGCGTGCTTGGCGGCGGCATTGTAGCCGGGTCGCTGGTATTGATCGGCGGCGAGCCAGGGATAGGCAA
GTCTACCCTAATGTTACAGTTGGCCATGAATATGCCGGGACTTAAAGTGCTATATGTATCCGGCGAAGAAAGCGAAAAGC
AAATAAAGATGAGAGCTGAGAGGCTAAACGCTACCCCCCAACCCCCTGAAGGGGGAGTTGAATTTGGAAGCGGAAATGCG
GTTCCCCCTTCAGGGGGCGGAGGGGGTTGTTACATCCTTACCGAAACCTCTACCCAAAACATCTTTAAACAAATAGAGCA
AACAGAGCCGGATCTGGTGGTAATCGATTCGATACAAACGCTATACTCATCGCATATCGAGTCGACGCCGGGGAGCGTAT
CTCAAGTGCGTGAATGTACGGCCGAACTGCTGCGTTTCGCAAAGGAAAGCGGCACGCCGGTAATATTAATTGGACACATC
ACCAAAGATGGCATGATAGCCGGCCCCAAGATACTGGAGCACATGGTTGATACGGTTCTACAGTTCGAGGGCGACAGGCA
CCATGTATACCGTATTTTGCGCTGCATCAAAAACCGTTTTGGTTCGGCATCAGAATTGGGTATTTATGAAATGTTAGGGG
TAGGGTTGAGGGAGGTATCTAACCCTTCAGAAATATTGCTTTCTCAACGAGATGAAGCTCTGAGCGGGATTACCATATCA
GCAACGCTTGAGGGTATGCGCCCAATGCTGATCGAGACGCAGGCACTTGTGAGTACATCGCCATACGGAACGCCGCAGCG
GTCGGCTACAGGCTTTGACACTCGCCGAATGAACATGCTTTTAGCGGTCCTTGAAAAAAAGTGTGGATTTAAACTCGGTG
CTAAAGACGTATTCCTGAATATAACCGGTGGTATAAAAGTAGAAGACCCCGCAATAGATTTGGGACTTGCCGCGGCCATT
ATATCCTCTCACGAAGATATTGCCGTCCCATCTAAAACTTGTTTTGCAGGTGAGTTGGGACTGTCGGGAGAGATACGCGC
GGTCAACCGCGTAGAACAGCGTATTGCTGAAGCACAGAAACTCGGCTTCGAAAAAATATTTATCTCGAAATACAACTTAC
CCTCTACCAAACAAGATAAACAACGGATAGATCTTTCCCGCTACACCATCGAGATCATTCCTGTTGCCGGGATCGATGAG
GTATTTAACCTATTATTCGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(366-452)

AAA domain (AAA_25)

(72-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4HYE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.898

100

0.501
  radA Streptococcus pneumoniae Rx1

46.721

100

0.468
  radA Streptococcus pneumoniae D39

46.721

100

0.468
  radA Streptococcus pneumoniae R6

46.721

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.721

100

0.468
  radA Streptococcus mitis NCTC 12261

46.721

100

0.468
  radA Streptococcus mitis SK321

46.516

100

0.466