Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RP6297_RS06095 Genome accession   NZ_CP066771
Coordinates   1280170..1281540 (+) Length   456 a.a.
NCBI ID   WP_009238271.1    Uniprot ID   -
Organism   Ralstonia pickettii strain K-288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1275170..1286540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP6297_RS06075 (RP6297_01216) rimI 1275660..1276187 (+) 528 WP_009238275.1 ribosomal protein S18-alanine N-acetyltransferase -
  RP6297_RS06080 (RP6297_01217) - 1276184..1276978 (+) 795 WP_009238274.1 uracil-DNA glycosylase family protein -
  RP6297_RS06085 (RP6297_01218) lplT 1277013..1278329 (-) 1317 WP_009238273.1 lysophospholipid transporter LplT -
  RP6297_RS06090 (RP6297_01219) alr 1278977..1280101 (+) 1125 WP_009238272.1 alanine racemase -
  RP6297_RS06095 (RP6297_01220) radA 1280170..1281540 (+) 1371 WP_009238271.1 DNA repair protein RadA Machinery gene
  RP6297_RS06100 (RP6297_01221) - 1281651..1282130 (+) 480 WP_009238270.1 disulfide bond formation protein B -
  RP6297_RS06105 (RP6297_01222) - 1282147..1282674 (+) 528 WP_009238269.1 DUF523 domain-containing protein -
  RP6297_RS06110 (RP6297_01223) - 1282657..1283763 (-) 1107 WP_009238268.1 CaiB/BaiF CoA-transferase family protein -
  RP6297_RS06115 (RP6297_01224) - 1283795..1285732 (-) 1938 WP_037027417.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48622.92 Da        Isoelectric Point: 7.0700

>NTDB_id=522455 RP6297_RS06095 WP_009238271.1 1280170..1281540(+) (radA) [Ralstonia pickettii strain K-288]
MAKSKTVYTCTECGGTAPKWAGQCPNCQQWNTLVETVAQPTSGAGARFQSLASSATVRKLSDIDAVDVPRFSSGIDEFDR
VLGGGLVSGGVVLIGGDPGIGKSTLLLQALSNLSTDRRVLYVSGEESGSQIALRARRLGIESPNLALLAEIQLERIQATI
ETEKPEVVVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKRLDVTTILVGHVTKEGALAGPRVLEHIVDTVLYFEGD
THSAYRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTANVPNP
RRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPRGLVVFGEIGLAGEI
RPTPRGQERLKEAAKLGFSIAVIPKSNAPKQAIDGLEVIAVERIEQAIDRVRSLEA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=522455 RP6297_RS06095 WP_009238271.1 1280170..1281540(+) (radA) [Ralstonia pickettii strain K-288]
TTGGCCAAGAGCAAGACGGTCTATACGTGCACCGAATGTGGTGGCACGGCGCCGAAGTGGGCAGGGCAGTGCCCGAATTG
CCAGCAGTGGAATACGCTGGTCGAAACCGTTGCGCAGCCGACGTCGGGCGCTGGCGCGCGCTTCCAGTCGCTGGCATCCA
GCGCGACGGTACGCAAGCTGTCGGACATCGACGCGGTGGATGTGCCGCGTTTCTCCAGCGGCATCGACGAATTTGACCGC
GTACTGGGCGGCGGCCTCGTCAGCGGCGGTGTGGTGCTCATCGGCGGTGATCCGGGGATCGGCAAATCGACGCTGTTGCT
GCAGGCGCTGTCCAACCTGTCGACCGATCGGCGGGTGCTGTACGTAAGCGGCGAAGAGTCCGGCTCGCAGATCGCGCTGC
GTGCGCGTCGCCTGGGCATCGAAAGCCCGAACCTCGCGCTGCTGGCAGAAATCCAGCTTGAGCGCATCCAGGCGACCATC
GAGACGGAAAAGCCGGAAGTCGTCGTCATCGATTCGATCCAGACGCTGTATTCCGAGGCGCTGACCTCGGCGCCGGGCTC
CGTGGCCCAGGTGCGCGAGTGCGCGGCGCAGCTGACGCGCATTGCGAAGCGGCTGGATGTGACCACCATTCTGGTTGGCC
ATGTGACCAAGGAAGGCGCGCTGGCGGGCCCCCGTGTGCTGGAACACATTGTCGATACGGTGCTGTATTTCGAGGGCGAT
ACGCATTCCGCCTACCGGCTCGTGCGGGCGTTCAAAAACCGTTTTGGCGCCGTCAACGAGCTGGGCGTGTTTGCGATGAC
GGAGCGCGGCCTGCGTGGCGTGGCGAATCCGTCGGCGCTCTTCCTGTCGCAGCACGAACAGGTGGTGCCGGGCTCGTGCG
TGCTGGTGACGCAGGAAGGCACGCGGCCGCTGCTGGTGGAAATTCAGGCGCTGGTGGATACGGCCAACGTGCCGAATCCG
CGGCGTCTGGCAGTGGGCCTGGAGCAGAACCGGCTGGCAATGTTGCTGGCGGTGCTGCACCGTCATGCCGGCATTGCGTG
CTTTGACCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATTACCGAGCCGGCGGCGGATCTGGCCGTGCTGCTGG
CCATCCATTCGTCGATGCGTAACAAGGCGCTCCCACGCGGGCTGGTGGTGTTCGGCGAGATCGGCCTGGCCGGGGAAATC
CGCCCGACGCCGCGCGGTCAGGAGCGGTTGAAGGAAGCGGCCAAGCTGGGCTTCTCGATTGCCGTGATCCCGAAATCCAA
CGCCCCCAAGCAGGCGATCGACGGACTGGAGGTCATCGCCGTTGAACGTATCGAGCAGGCCATCGACCGCGTGCGGTCGC
TCGAGGCTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-219)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.496
  radA Streptococcus pneumoniae Rx1

46.491

100

0.465
  radA Streptococcus pneumoniae D39

46.491

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.465
  radA Streptococcus pneumoniae R6

46.491

100

0.465
  radA Streptococcus mitis SK321

46.593

99.781

0.465
  radA Streptococcus mitis NCTC 12261

46.272

100

0.463